BAC Information

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BAC

Clone NameMSMg01-457G18
Chromosome1 (Build37)
Map Location 107,709,184 - 107,883,461
singlet/doubletdoublet
Overlap geneTnfrsf11a, EG635504
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
Downstream geneZcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457G18.T7 (MSMg01no457_g18.b1)MSMg01-457G18.TJ (MSMg01no457_g18.g1)
ACCAG543493AG543494
length771783
length of high quality
(start - end)
349 (76 - 424)171 (79 - 249)
definitionCHROMAT_FILE: MSMg01no457_g18.b1 PHD_FILE: MSMg01no457_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:37 2005CHROMAT_FILE: MSMg01no457_g18.g1 PHD_FILE: MSMg01no457_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,883,113 - 107,883,461)(107,709,184 - 107,709,354)
sequence
NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACATGGTTTCCCGACAGTAAATGTGAGCCACGAAGCATCCT
TGGCTGGGATATAAATGTCAGTTAACTGACCATGCCTTTTTCAACTTCAT
ATTTTACCAGCAACTAATCTGTTCATCCCATTTAGCACACAGTAAATGTT
CATAAGCAATTATGAAATAAATGAGTGGACAGTAGAACAGAAGTAAAGGC
CAGAAGTTTAAGGGCGTTCGAGTTCATGACAAAAATGTGGATACCAGCAT
CTTCAGGCCAGATCTGACCGGCTCCCTTGCTCCACTTGCTCAAGTTCCAT
GTCCACTCTTGATCAGTCTCTGGGTCCAAAAGAGTGGAGTCAGCTTATTC
AGAATTATAGGGATCCACAGAAAACACATCAGGGCTGTTGCAAAGAAGGA
AGGGAAGTGTGGATCCCGAGGAAGCAAATTCATATGTTAACACCATTGTA
CTTTAGTGTGCCCTTTTTATCACTTAAATGTCACAATACCTTTTCTAAAA
TAATTTTCTGGCCCGTTGGAACCCTAAACCTTCTTTAAACTCGGATGGCT
ATCTTTCTTTCTTCTCTTCTTAATTCTGTTTCCTCAATATCTCCCCCACT
ATCCCACTCTTTCTTTTTCTCCTTGTATTCCCTTTCCCCCTTCACCTCTC
TTTCTTCCCATTATCCCTTTATCCTCCTTCTTCTCTCATCTTCTTTTCCT
TCCTCTCATCTTCCCCTATCA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAAATTCAGGCCAGGATTTCAACAAGCCCC
TGGCCAGAGGGACATCACCCACTGGCGCAAATGCTTTGTCCTATGTGTGT
TACTGTTTACTAGATGTTTGTTGAGTAGGTACACAACTCAAACTTACACA
AAACTTTATACCACACATGTTTTCTGGGCAGAGCATATCACTGCCTTCTT
GTATGTATATTCAAGATGCCACTGCTCATGTTGACATTTAATATAGGACA
TCGTCCAATAAAAGCAAAACTGATTTTTTTTTTTTTGGATAGACAGAAGC
ATGGACCCTTCTTTATTTGTTTCATCTATCCAAGTGGTGGTATTGTCGAC
CTTTGTTTTTTTCTTCTCACCCCCCCCCCTGGTTGCATATTCTTTTTATT
TCTTATCCCCTCCTATTTTTTTGTTTATTCTCCCTATTCTTTTTTTCCCT
TTCCTCCTACCTCTTTTTTATTCTCTTCATTTTCTTTTCTTCTCTTCTAT
CCTCTCTTACCTCCTTTTTTTCTTTATTCTTTCTCTTTTTTTTGCCTTAC
TTCTTTTTCTATTTTTTCCTTACTTTTTCCTTTCCCCTTTTCTTTTTTTT
CCCCTCTCTTTTTTTCCCTCTCTCTTTCTCCTCCCCTTTTTTTTTTCTCT
TTTTCTCCTTTACCTTTACACCCATTTTTTACTCCCTCTTTTTTTTTGCT
TTTTTCACCTTCCTCTCTTTTTCTCCTTTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_g18.b1 MSMg01no457_g18.b1 CHROMAT_FILE:
MSMg01no457_g18.b1 PHD_FILE: MSMg01no457_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:37 2005
         (349 letters)



>mm_chr1_107882913_107883661
          Length = 749

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaatgtgagccacgaagcatccttggctgggatataaatgtcagttaactgaccatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 549 gtaaatgtgagccacgaagcatccttggctgggatataaatgtcagttaactggccatgc 490

                                                                       
Query: 61  ctttttcaacttcatattttaccagcaactaatctgttcatcccatttagcacacagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctttttcaacttcatattttaccagcaactaatctgttcatcccatttagcacacagtaa 430

                                                                       
Query: 121 atgttcataagcaattatgaaataaatgagtggacagtagaacagaagtaaaggccagaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgttcataaacaattatgaaataaatgagtggacagtagaacagaagtaaaggccagaa 370

                                                                       
Query: 181 gtttaagggcgttcgagttcatgacaaaaatgtggataccagcatcttcaggccagatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtttaagggcgttcgagttcatgacaaaaatgtggataccagcatcttcaggccagatct 310

                                                                       
Query: 241 gaccggctcccttgctccacttgctcaagttccatgtccactcttgatcagtctctgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaccggctcccttgctccacttgctcaagttccatgtccactcttgatcagtctctgggt 250

                                                            
Query: 301 ccaaaagagtggagtcagcttattcagaattatagggatccacagaaaa 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccaaaagagtggagtcagcttattcagaattatagggatccacagaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no457_g18.g1 MSMg01no457_g18.g1 CHROMAT_FILE:
MSMg01no457_g18.g1 PHD_FILE: MSMg01no457_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:37 2005
         (171 letters)



>mm_chr1_107708984_107709554
          Length = 571

 Score =  308 bits (159), Expect = 2e-88
 Identities = 168/171 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccaggatttcaacaagcccctggccagagggacatcacccactggcgcaaatgctttg 60
           |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 201 ggcctggatttcaacaagcccctggccagagggacatcacccactggcacaaatgccttg 260

                                                                       
Query: 61  tcctatgtgtgttactgtttactagatgtttgttgagtaggtacacaactcaaacttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctatgtgtgttactgtttactagatgtttgttgagtaggtacacaactcaaacttaca 320

                                                              
Query: 121 caaaactttataccacacatgttttctgggcagagcatatcactgccttct 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaactttataccacacatgttttctgggcagagcatatcactgccttct 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)