BAC Information

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BAC

Clone NameMSMg01-458A24
Chromosome1 (Build37)
Map Location 87,483,122 - 87,483,596
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458A24.T7 (MSMg01no458_a24.b1)MSMg01-458A24.TJ (MSMg01no458_a24.g1)
ACCAG543980AG543981
length761791
length of high quality
(start - end)		526 (82 - 607)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no458_a24.b1 PHD_FILE: MSMg01no458_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:32 2005CHROMAT_FILE: MSMg01no458_a24.g1 PHD_FILE: MSMg01no458_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTTAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAA
TCCGCGGAATTCAGGAATCTGTCTCGAAAGTCCAAACAATAAACTTAGCT
GGAGGGATCTTGCCATGAAATCACCACTCTCTAAATCTTGTTATTTCCTT
CCTTAATATCTTTCTGACAAGGTGGCTCACACTGCAGCAGCCTCTGTTTT
TTAGGTCCATGAAGCCCCCTTCATGGAATTCATATTGCATCCTTATATTT
TGCATAGTTGAGAATATATTGAACTCATGTTGCCAAACTCATTCTATGAG
ACAGTTTTATTCATATCCTTCACCTGTTTGACTATATTTTCTTGTATTTC
TTTATGTTTATTTGCTTCCTCCTTTAATGCTTTTACTTGCTTGAATGTAT
TTTCATGTATTTCCTTAAGGAATTTATTCATTTCTTCTTTAAAGGCTTTT
ATTAGCTTCATTAGATTGAATTTAAAATCCTCTTCTTGTGCTTCAGTTTC
ATTAGGATATCCAGGGTTTGTTGTAGAAGGATAGCTGCACACAACTCACC
TCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACT
GGAATGGGATTGGTTGGGCAGGGTTCCAAGATCATTAGTTTTTGGGTTCT
TGAAGGTTTCCACGGGGAAGTAGGATTCTCTTGTTTTCCCACAAGACTCC
TCTGGACCGAAAATGAGTCCAGAACTAAACATGGATCTCAGGGAACCATG
TCCCCCCCCGA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGAATCAGTTCTTGGGAAATTAA
GCTAGGGAACAGACAATGGTAGAGCCTAAGGATGACTTCTGGGCATGAGA
ACCCAAGAATTTGTGAAGGGAAAACAAGAACCAGACATGAGGAGATAAAG
ACTTGAGCAGCTGGAGTATTGGATCGTTTGCCTGCTATCCCAGCACTTGA
AAGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAAAACGGACTTGGA
AGGCTTCCAGGAAGCAATGGGGAAACCAATGGATGACAGTATCAGAAAGG
TCACAGTGTTTTTATCATTATTATCATTATCATAATTATGATATTTATCA
GTATGTGGAGGTTGGGCATATGTTCCATGGTACACATGGAGAGGCCAAGA
AACAACTTGTGAGTTGGGTCTGTTCTTCCACCATATGGGTTGCAGGGATC
AAATTCAGGTCACCAGGCTTGGTGGCAAGGACCTCGAGGTAGTGAGCCAT
TTGACAGACCAATGACACATTTTAATTGACTGGTGACATCTCAGAGTAAA
AAATGGGAGAGCGCCCAAAGTCGATGTGGGAAAAAGTTAAAAAAACCCAG
CCCCGAAAAAGGAACTTTCCCCAGTCTGGACAAGTGTTGGAAAACCTGAA
AAATGGNTCCTGTGCGGGTATCACATTAAAGAGATTTTGGTGTCTCGGTA
CTCCCCTATTTGTAAGTGTGGGGGGGCAACCCCCTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_a24.g1 MSMg01no458_a24.g1 CHROMAT_FILE:
MSMg01no458_a24.g1 PHD_FILE: MSMg01no458_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:32 2005
         (475 letters)



>mm_chr1_87482922_87483796
          Length = 875

 Score =  864 bits (447), Expect = 0.0
 Identities = 468/475 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaatcagttcttgggaaattaagctagggaacagacaatggtagagcctaaggatga 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaaggatga 260

                                                                       
Query: 61  cttctgggcatgagaacccaagaatttgtgaagggaaaacaagaaccagacatgaggaga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggaga 320

                                                                       
Query: 121 taaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagca 380

                                                                       
Query: 181 tccaggaccatggaaagaactgaggtgggagaaaacggacttggaaggcttccaggaagc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttccaggaagc 440

                                                                       
Query: 241 aatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatc 500

                                                                       
Query: 301 attatcataattatgatatttatcagtatgtggaggttgggcatatgttccatggtacac 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatcataattatgacatttatcagtatgtggaggttgggcatatgttccatggtacac 560

                                                                       
Query: 361 atggagaggccaagaaacaacttgtgagttgggtctgttcttccaccatatgggttgcag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 atggagaggccaagaaacaacttgtgagttgggtctgttcttccaccatatgggtttcag 620

                                                                  
Query: 421 ggatcaaattcaggtcaccaggcttggtggcaaggacctcgaggtagtgagccat 475
           ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ggatcaaatgcaggtcaccaggcttggtggcaaggacctcgagctagtgagccat 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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