BAC Information

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BAC

Clone NameMSMg01-458B07
Chromosome1 (Build37)
Map Location 184,417,197 - 184,417,498
singlet/doubletsinglet
Overlap geneCapn2
Upstream geneCcdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2
Downstream geneLOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458B07.T7 (MSMg01no458_b07.b1)MSMg01-458B07.TJ (MSMg01no458_b07.g1)
ACCAG543994AG543995
length764752
length of high quality
(start - end)
596 (53 - 648)467 (80 - 546)
definitionCHROMAT_FILE: MSMg01no458_b07.b1 PHD_FILE: MSMg01no458_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:33 2005CHROMAT_FILE: MSMg01no458_b07.g1 PHD_FILE: MSMg01no458_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGTCATCTGCGCCCTTATCTATAAGCAATTATCATTAT
TATTATTACTACTACTACTACTATTACTATTATTTTTAGACAGGGTCTCT
TTGTGTATCTTGGCTGTCCTAGAGTTTACCACGTGGCAGGTTGGCTCTGA
ACTCATGAGAGCTTCTCCTGCTTCTGTCTCCAAAATGCTGAGTATCACCA
TGCCTGGCCAATCTTTAAAAACCATCATTGTATCCCCAACTGAACTGTCT
TGTCACCCTTACTGAAAACCAAATAAGTATTTGAGGGTTTATTTCCAGAC
TCTCTATTTTACCCCACTGACCTATCATTAGATCTCGTACCCTACTGCTT
TGACCACCATAACTTAGTACTACGTTTTAAAATCCAGAAGTATTTGTCTT
CCAACACTACTACTCAAAATTGTGTTAGTTATTTTGGGTCTCTTATATTT
CCACAATACCTTTAAGATTAGCTGTCCAAATTCTAAAATATATGTATATA
CAGAGGTGAGACTTGCTCAGTACTGTATAGTATTACAGACAGACCTGAGG
AACACTGTTACATTAACAATATAAAATCTTCCAGTCCACAAACATACACA
CCTATTTTTCTTTCATTTTTGTTTGAAACCCCTTTCTTTTCTTTTTTTAA
AAAATTTATTTATGGTTATTTTATGCGCATTGGAATGCTGCCTGCATAGG
CTTGGGAAGGCATC
TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGAAGTGTTTAGACCCC
AAGAGAAAACACAGAAAGATGAGACCTTTCCTTCCATCAGTCTCTAAAGA
GAGATCCTTGGCTCATTAAGAAACCAACTCTAAGCCAGGCGGTGGTGGTG
CACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTGAGTT
TGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACAC
AGAGAAACCCTGTCTTGAAAGATTTTTAAAAGAAAAGAAAAGAAAAGAAA
AAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGA
AAGGAAGAAAGAAAGAAAGAAACCAGTTCGTTAGTGAGCCGAGAAGGTCT
TCTGTGTGTGCACTGCCCCCACAGAACACCTCGAGTGGATATTGTTCCAA
GAGCCCATATGTTGTTTCGGTTCGCACTTATTCTTGGATTTCATTCCACA
ACTGAGAACTCTGTGGTGGAAAGAGAATTCACTATTTTGTCCAAATCCCC
CTGAAAAAGTGTTTTTTTTTTAATAGATTTGGAGTCTCCGGAACTGGCCA
TAACGTCTATCACTGAAGTCTAAAACGTCCTCCCCCCCCCTGGCTCTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_b07.g1 MSMg01no458_b07.g1 CHROMAT_FILE:
MSMg01no458_b07.g1 PHD_FILE: MSMg01no458_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:34 2005
         (467 letters)



>mm_chr1_184417194_184418062
          Length = 869

 Score =  493 bits (255), Expect = e-144
 Identities = 291/307 (94%), Gaps = 10/307 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagaagtgtttagaccccaagagaaaacac--agaaagatgagacctttccttccat 58
           |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 305 cttcagaaatgtttagaccccaagagaaaacacagagaaagatgagacctttccttccat 246

                                                                       
Query: 59  cagtctctaaagagagatccttggctcattaagaaaccaactctaagccaggcggtggtg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagtctctaaagagagatccttggctcattaagaaaccaactctaagccaggcggtggtg 186

                                                                       
Query: 119 gtgcacgcctttaatcccagcactcgggaggcagaggcaggcagatttgagtttgaggcc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtgcacgcctttaatcccagcactcgggaggcagaggcaggcagatttgagtttgaggcc 126

                                                                       
Query: 179 agcctggtctacagagtgagtttcaggacagccagggctacacagagaaaccctgtcttg 238
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 125 agcctggtctacagagtgagtttcaggacagccagggctacacagtgaaaccctgtctcg 66

                                                                       
Query: 239 aaagatttttaaaagaaaagaaaagaaaa-gaaa--aagaaagaaagaaaggaaggaagg 295
           |||||     |||| |||||||||||||| ||||  ||||||||||||||| ||| ||||
Sbjct: 65  aaaga-----aaaaaaaaagaaaagaaaaagaaagaaagaaagaaagaaagaaagaaagg 11

                  
Query: 296 aaggaag 302
           |||||||
Sbjct: 10  aaggaag 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 869
Length adjustment: 10
Effective length of query: 457
Effective length of database: 859
Effective search space:   392563
Effective search space used:   392563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)