BAC Information

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BAC

Clone NameMSMg01-458G14
Chromosome1 (Build37)
Map Location 141,837,883 - 141,838,057
singlet/doubletsinglet
Overlap geneEG545367
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399
Downstream geneCfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458G14.T7 (MSMg01no458_g14.b1)MSMg01-458G14.TJ (MSMg01no458_g14.g1)
ACCAG544248AG544249
length731747
length of high quality
(start - end)
280 (331 - 610)174 (76 - 249)
definitionCHROMAT_FILE: MSMg01no458_g14.b1 PHD_FILE: MSMg01no458_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:00 2005CHROMAT_FILE: MSMg01no458_g14.g1 PHD_FILE: MSMg01no458_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAAG
GGGCGGAATTCAGAAACTTCCCAAAACAAGCATGATTTTAACCACTGAGA
CATCTCTCCAGCCCTCAAGTTTTCATGACCTAATTTCATACTTCAATTCA
TAATTTTGATACTGGAGACCTAGCCTACATAAGTAAGAGCTTGAATATTA
AAAGTATTGTCTTCTAATAAGAGATACATGATATACCCAGGCTACACAAA
GGATTCATTAATTTAATGAAATTTTTGGTTTGTTTGCTTTTGGAAACAGA
ACTTAGTATGTAGTCCAATATTTCCTATTATTAAAATTTCTTGATCCTTG
GTCTTAATTGTTAGAATCATAACGGTATCATATACAACTGATAAATATAT
TATTTTAAATACAGATTATCACGCCAGAATGATGGCTGTCAGTGAGAGTG
CTTGCCTCTAAGCCTGGAGTCCTGAATTCAATACCTCAGACACTTATGAT
GAAAAGAGAGAGCTGACTCCCACAGGTTCTCTGACACCTACATGTGTATT
GCAGTATATATACCTCCATAAATGTACACACACAGGATAAATAAGTGAAT
GTAATGAAATAATAAATGCAAATATAAACATCAACGTCTTAGAAAATAGT
CCTTTTTCATAGGTTACATAAAATCATAAGGAAGATTCTAAGAATTTCAA
TTTTTAGCACATAAGGTCAATATTTTTCCTG
CCAATGATCTGTGTAGGCCTGGNGGCCGCCTGGCTGCAAAATTTAGGNNG
AACTATAGAAGTTTTCGCGAAATTCCTTGGAGTTCTCTCTTGCCCCCAAA
ATGCCCTACATTCTCGTCACCTCTTCCAAAACTTTTTTACTCCAACACAC
CTGATTCCTTCTGTTACCATCCCTTCAGTTTAGAAAGTAGCAATTATCTT
TTATGAATGACCCTAATCAAAATTTTTTATTTTAATTTATACTTTAGAAG
AAGTGAGATTTTAAGGCAGAGAAGAATTATGTATTTATTTATTTATTCAT
TTATTTATTGTTTACTTAATTACTCTTGGTAACATTCAACAATTTCAAAA
ATTGAAGAAAAATTTTATCATACTGGAGAATATTATATATTCTTAATTTG
CATTAAAATAACTGACAATTAATTATTAATTAGAACTAGAAATATATCAT
ATGGTTTAATATAAAGGTTGTACATGCTTCTGTTTTTTTAATTGGAAAAT
ATACCAACTATATTTTCCTACATTAAACATTATTTTATATATTTTACTTT
CCCATTACATTACTATGAAAAGATTTTAATATGTGACTTAGATATTGTAT
AACAGTAATTTCAAATCTGAGGGAAACATCTTATGTTATAATAATAGGTG
TCACATACCATCCTGTGAGAAAGTGAGCCCTTCTCAATCTCCCTTACAGG
TCATATGTCCTCATGCTAAGAGCTGGTCATCAACCCCATTCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_g14.g1 MSMg01no458_g14.g1 CHROMAT_FILE:
MSMg01no458_g14.g1 PHD_FILE: MSMg01no458_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:00 2005
         (174 letters)



>mm_chr1_141837715_141838289
          Length = 575

 Score =  248 bits (128), Expect = 2e-70
 Identities = 164/176 (93%), Gaps = 3/176 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggagttctctcttg-cccccaaaatgccctacattctcgtcacctcttccaaaactt 59
           ||||||||||||||||| |||||||||||||||||| ||| || ||||||||||||| ||
Sbjct: 343 cttggagttctctcttgccccccaaaatgccctacaatctagttacctcttccaaaa-tt 285

                                                                       
Query: 60  tttt-actccaacacacctgattccttctgttaccatcccttcagtttagaaagtagcaa 118
           |||| |||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct: 284 ttttcactccaacccacctgatttcttctgttaccatcccttcggtttggaaagtagcaa 225

                                                                   
Query: 119 ttatcttttatgaatgaccctaatcaaaattttttattttaatttatactttagaa 174
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 224 ttatcttttatgaatgaccctaattaaaatttgttattttaatttatactttagaa 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 575
Length adjustment: 8
Effective length of query: 166
Effective length of database: 567
Effective search space:    94122
Effective search space used:    94122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)