TTAAAAATACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGA
CCGCGGAATTCTCTTACGTTTCCTTAAAACTCTAAAATTGTTCCATTTAT
GAACCTTGAATCATCTCCTCATGCAATATTTCAATTTGGCTCTCAGGGTG
TTGCAAATGAGGCCGTGCAGCAATCACACTGAATTCCTGCTGCAGCTAAA
TACCTGGTATTAAAATAGTTTTAAGTGAACATTAACTACATGATATTTTC
AAAGCTGGGAATAAGTGCAAATCTCACAGTGCTGCATAATAGCATACCTC
AGGATCCACAATATCCAAGCCGTCGGGAGAATCTTCTAAAGGTGGGGAAG
CTCCTGTAACAAGAGATAGTCAAAACATCAGTTCCAGAAGAGGCCATAGC
ATTTGCTTCAGCACCCATGCCATAAAAAATACGCAGGTCTTAATAGACTC
CATCACACAGCTGAGCAAAAGAAGTCATTGAGAAGGTACCACTTATGAAT
GTAACAGAAAGTACTGCTAAGAGGAAAAGGAAGCTACCTCCTTCTAATGC
ACTCCAATCCAAGATGGGGAACAACAGTAATCCTAAAACTGGCTGGGGCT
CACTTAAAAGGGAATTTTCAAGCCCCACCTGTTAAAAAAATCCAGAAAAA
AAAGGGGAAACACTTTTAAAAAAACAACCGGGTTTTCTACTTTTGGGGGA
AAATCTGGGTGGGGTTCAAATTTTTCCAAAAAGTCN

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGCAATTCTTGATATCCAGCAAAGAAGGGGGGA
AATCACAGCTTAACATGAAACGGCAGATGTAACGAAACCTCACTAACAGC
TTAGTCTCATAAGGAGACAGATGGAAAACTTCTCTCCAGAGATGGCTGCT
TCTAGAATTCCAGAAGGAGCTTGGGGTGGATTGGCTGGTAGGAGGCTTCG
AAGGAGCTCAGGTCTGAATTTCAATGAGGAGGGAACACTTTTTAGTTTAA
ATGCAAGATTTCAGTTATCTCTCTTTTTTTAAACAGGGAGATTACACCAT
GCATCGGTTTCATCTAGGACGGAAAAAGCAGCACTCCAAACCTTAGGCTC
TCCCTCAGTGTCTGAGTCCAGCAAAGAACGGAAGATGCTGCAGGCTCTTT
GTTTCCTATAGAGGCACCACAATGCCATCATCTGTTCAGGAACAGAAAGG
AAGAACCTTCCAAGGTGTTATCAGGGAACCCAAGTGTTGGAAAAGAATTA
TTTCCATGATAAAAACACTGCTGGCTTTTGGCTCACAAATAGGCGGAGAG
GCCAATAGCTACTTTCCAGGGTCTCAGGGGTCCAGCATCCCGAAATGCTA
TGCAGTCTGCTCAGTGCATAACATACACCAGAGTGTTGCCGAGCTCTACG
TCACAGAAATGGCCCAGACTCTGGAAGCCCCATTTTCCCCCGGGGACAAA
AGGCCCCAATCTCACCATGTTC

Query= MSMg01no458_h24.b1 MSMg01no458_h24.b1 CHROMAT_FILE:
MSMg01no458_h24.b1 PHD_FILE: MSMg01no458_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:07 2005
         (412 letters)



>mm_chr1_38998024_38998835
          Length = 812

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 19  ttaaaactctaaaattgttccatttatgaaccttgaatcatctcctcatgcaatatttca 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttaaaactctaaaattgttccatttatgaaccttgaatcatctcctcatgcaatatttca 553

                                                                       
Query: 79  atttggctctcagggtgttgcaaatgaggccgtgcagcaatcacactgaattcctgctgc 138
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atttggctctcagggtgtcgcaaatgaggccgtgcagcaatcacactgaattcctgctgc 493

                                                                       
Query: 139 agctaaatacctggtattaaaatagttttaagtgaacattaactacatgatattttcaaa 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agctaaatacctggtattaaaatagttttaagtgaacattaactacatgatattttcaaa 433

                                                                       
Query: 199 gctgggaataagtgcaaatctcacagtgctgcataatagcatacctcaggatccacaata 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctgggaataagtgcaaatctcacagtgctgcataatagcatacctcaggatccacaata 373

                                                                       
Query: 259 tccaagccgtcgggagaatcttctaaaggtggggaagctcctgtaacaagagatagtcaa 318
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||
Sbjct: 372 tccaagccgtcgggagaatcagctaaaggtggggaagctcctgtaacaagagacagtcaa 313

                                                                       
Query: 319 aacatcagttccagaagaggccatagcatttgcttcagcacccatgccataaaaaatacg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aacatcagttccagaagaggccatagcatttgcttcagcacccatgccataaaaaatacg 253

                                             
Query: 379 caggtcttaatagactccatcacacagctgagca 412
           ||||||||||||||||||||||||||||||||||
Sbjct: 252 caggtcttaatagactccatcacacagctgagca 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no458_h24.g1 MSMg01no458_h24.g1 CHROMAT_FILE:
MSMg01no458_h24.g1 PHD_FILE: MSMg01no458_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:07 2005
         (498 letters)



>mm_chr1_38786859_38787756
          Length = 898

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatatccagcaaagaaggggggaaatcacagcttaacatgaaacggcagatgtaacga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ttgatatccagcaaagaaggggggaaatcacagcttaacataaaacggcagatgtaacga 260

                                                                       
Query: 61  aacctcactaacagcttagtctcataaggagacagatggaaaacttctctccagagatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctcactaacagcttagtctcataaggagacagatggaaaacttctctccagagatgg 320

                                                                       
Query: 121 ctgcttctagaattccagaaggagcttggggtggattggctggtaggaggcttcgaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcttctagaattccagaaggagcttggggtggattggctggtaggaggcttcgaagga 380

                                                                       
Query: 181 gctcaggtctgaatttcaatgaggagggaacactttttagtttaaatgcaagatttcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcaggtctgaatttcaatgaggagggaacactttttagtttaaatgcaagatttcagt 440

                                                                       
Query: 241 tatctctctttttttaaacagggagattacaccatgcatcggtttcatctaggacggaaa 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctctcttttaggaaacagggagattacaccatgcatcggtttcatctaggacggaaa 500

                                                                       
Query: 301 aagcagcactccaaaccttaggctctccctcagtgtctgagtccagcaaagaacggaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcagcactccaaaccttaggctctccctcagtgtctgagtccagcaaagaacggaaga 560

                                                                       
Query: 361 tgctgcaggctctttgtttcctatagaggcaccacaatgccatcatctgttcaggaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgcaggctctttgtttcctatagaggcaccacaatgccatcatctgttcaggaacag 620

                                                                       
Query: 421 aaaggaagaaccttccaaggtgttatcagggaacccaagtgttggaaaagaattatttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggaagaaccttccaaggtgttatcagggaacccaagtgttggaaaagaattatttcc 680

                             
Query: 481 atgataaaaacactgctg 498
           ||||||||||||||||||
Sbjct: 681 atgataaaaacactgctg 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)