Query= MSMg01no458_i02.b1 MSMg01no458_i02.b1 CHROMAT_FILE:
MSMg01no458_i02.b1 PHD_FILE: MSMg01no458_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:07 2005
(530 letters)
>mm_chr1_38007808_38008737
Length = 930
Score = 835 bits (432), Expect = 0.0
Identities = 490/530 (92%), Gaps = 35/530 (6%)
Strand = Plus / Plus
Query: 1 tgcagagagagggtgtggagacagtcataggatcaggtttcctcaggtctccataggagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tgcagagagagggtgtggagacagtcataggatcagatttcctcaggtctccataggagg 260
Query: 61 gctcctctatcagcaactcgctcttctgtctcacatctctctcccaagatgtcggccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcctctatcagcaactcgctcttctgtctcacatctctctcccaagatgtcggccact 320
Query: 121 gtgattctagacatcaccgaaggggaggcattgctttaattgatcacttgattaattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgattctagacatcaccgaaggggaggcattgctttaattgatcacttgattaattaat 380
Query: 181 taattaactaactaattaattaattagttaattaattaatgtttttgaaacaggcttgta 240
|| ||||||||||||||| ||||||| ||||||||||||||
Sbjct: 381 tag--------ctaattaattaatta------------atgttttggaaacaggcttgta 420
Query: 241 atggtttgtatatgcttggcccagggagtgccactattaggggtgtggccttgttggaat 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 421 atggtttgtatatgcttggcccagagagtgccactattaggggtgtggccttgttggaat 480
Query: 301 acatgtgtcactgtgggcatgggcttcattctaaccacctgaaagtcaatcttctagctg 360
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 481 acatgtgtcac-------atgggcttcattctaaccacctggaagtcaatcttctagctg 533
Query: 361 ccttcagaacaaaaggtggaactgtcagctcttccagccttacatctgcctgcatgctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccttcagaacaaaaggtggaactgtcagctcttccagccttacatctgcctgcatgctgc 593
Query: 421 aatgtccccgcccccccccccccccaatgacaatggactgaacctctgaacctttaagcc 480
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 594 aatgtccccgcccccccc--------atgacaatggactgaacctctgaacctttaagcc 645
Query: 481 agccccaattaagtgttcccttataagagttgtcttggtcattgtgtctg 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agccccaattaagtgttcccttataagagttgtcttggtcattgtgtctg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_i02.g1 MSMg01no458_i02.g1 CHROMAT_FILE:
MSMg01no458_i02.g1 PHD_FILE: MSMg01no458_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:07 2005
(515 letters)
>mm_chr1_38177409_38178323
Length = 915
Score = 797 bits (412), Expect = 0.0
Identities = 421/424 (99%)
Strand = Plus / Minus
Query: 88 tcccctctgtgtacactttaaatatcagcaaaaccagccaggactagtttatgaattact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tcccctctgtgtacactttaaatatcagcaaaaccagccaggactagtttatgaattact 856
Query: 148 tgggaaacttatagaaatacaaatttctagccctgcccaaaacctgtagtctctgaatca 207
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgggaaacttacagaaatacaaatttctagccctgcccaaaacctgtagtctctgaatca 796
Query: 208 gaatcatttaaattgggatgcagtggtctgtgtttagttttataggcctgttatgttttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gaatcatttaaattgggatgcagtggtctgtgtttagttttataggcctgttatgttttt 736
Query: 268 ctgatgctcaggaatgagaaccacagctccagagaaaaactcccttctttgatacttctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctgatgctcaggaatgagaaccacagctccagagaaaaactcccttctttgatacttctg 676
Query: 328 ttccttacctgttttgtctctactattagacttgggtgtatgacccatgaaatcctgtgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttccttacctgttttgtctctactattagacttgggtgtatgacccatgaaatcctgtgg 616
Query: 388 tttcaaactttactgtgattgactgcagtcttgacgtttcctacaggtaattatttgctg 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cttcaaactttactgtgattgactgcagtcttgacgtttcctacaggtaattatttgctg 556
Query: 448 cttttccccaggcatggccaatagtgttttacttcctcgttggactcttttttttttttt 507
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttttccccaggcatggccaacagtgttttacttcctcgttggactcttttttttttttt 496
Query: 508 tttt 511
||||
Sbjct: 495 tttt 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
