BAC Information

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BAC

Clone NameMSMg01-458I11
Chromosome1 (Build37)
Map Location 172,445,473 - 172,446,004
singlet/doubletsinglet
Overlap geneNos1ap
Upstream geneNuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458I11.T7 (MSMg01no458_i11.b1)MSMg01-458I11.TJ (MSMg01no458_i11.g1)
ACCAG544337AG544338
length741742
length of high quality
(start - end)		531 (75 - 605)108 (127 - 234)
definitionCHROMAT_FILE: MSMg01no458_i11.b1 PHD_FILE: MSMg01no458_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:09 2005CHROMAT_FILE: MSMg01no458_i11.g1 PHD_FILE: MSMg01no458_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXATATCAAGAACAGCGC
GGAATTCAAGCACTTACACTGACTCAGACTCCCAAGTGCTGTGACTGTGC
AGCCTGAAGCACCACATCTGGCTACTCTTTTTTAATTACTGGAATTTTAT
TGAGTTATTTCTAGACATATTGTAGACCACCAACATTTTGTTAAGTTCCT
GACTGGAGAAAGAATGGACTAATATTAGCTTTATAAAAAAAGTACTCAAT
TGGACTTTTTATTGCTTTTTGAGACAGGTTCACCATCTAATTGAGACTGA
CCTCAAAATCACCTGTTCCCCTGTTCTTCCTCCTGAGTGTCCGGGATTAC
AGGTGTGCACCACCACACCTGCCCTGATTATACTTTGAAGTTGTCCACTA
AACCAGATTGCATTAAGGTTAATGTTTAACATGTATTTCCTTGCTAAAGA
CTATTCAATAATGCAAAAATAAGCAAACAAAAGAATCAAGCCCTCACTCT
CAACTGATTAGTACCAGTCTCTGTCTTTGCTTACCAATGGGCATAAATTC
AGACAATTAGTTCTAAGGGGGGGGGAGGCTGTATTATTCAGGAATTTAAA
TACAACCCAGGTATCTAAGTCCGNGCAGGGAGGTGATCATATTGAACATC
AGGCCTTCTTTCTTGACAGACCCTTCAAACTTATTCCCTCGCTTCCCTAA
ATCCCTTCACCTATTTGTCCAATAGTTTCCCATGGAATTTA

TTATATATTGAAGGGGGAGGGGGGNGGGGGCCCGTTCCCACCAGGGGGNN
GAACANAGATTTACAGCACCAGGCGNNGNNCAGCNCNGAGCCCCATCCCT
TAACGGGGNCGGTTTGATCTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGACTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTCTTTGCCTTATTGACGGTGTCTTTTGTCTTTT
TTAAACNTTGGAGTCTCATTAGGTCCTATTTGTCATTTCTCGATCTTACA
GCACAAGCCATTGTTTTTTTTTTTCACGAATCTTTCCTCTGCGCCCATAT
TTTCTAGTCTTTTCCCCACTTTCTCCTCTATTAGTCTCAGTGTCTCTGGT
TTCATGTGAAGTTCCTTGATATCTTTACACTTGACCTTACTATTAGGCGA
TTCCTATGGCTCGACCCGCATTCTTCCCAATGATCCCACCCTGTTGCGTC
CTCCCATCTGCTCACGATGTTTCCTTTCTCCCCCCGTACCGCTTTACTTT
CCTTGACCAATACCTTTTCATTACACTCCGCGCGCCTTCTCCTTCGCGCC
CTTCTTCCTTATCCTCTTTCATTTCCCATCTTCATCGCCTTTCTCCCCTC
TTTTTTTTTTTCTTCCCCTTCCCTCCCTTATTCTTTCCCTTATCTCCCTT
TCTCCTTCCCCATCCTTCTTATTCTTTTCCCTTCCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_i11.b1 MSMg01no458_i11.b1 CHROMAT_FILE:
MSMg01no458_i11.b1 PHD_FILE: MSMg01no458_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:09 2005
         (531 letters)



>mm_chr1_172445274_172446204
          Length = 931

 Score = 1006 bits (520), Expect = 0.0
 Identities = 529/532 (99%), Gaps = 1/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagactcccaagtgctgtgactgtgcagcctgaagcaccacatctggctactctttttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagactcccaagtgctgtgactgtgcagcctgaagcaccacatctggctactctttttta 259

                                                                       
Query: 61  attactggaattttattgagttatttctagacatattgtagaccaccaacattttgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attactggaattttattgagttatttctagacatattgtagaccaccaacattttgttaa 319

                                                                       
Query: 121 gttcctgactggagaaagaatggactaatattagctttataaaaaaagtactcaattgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttcctgactggagaaagaatggactaatattagctttataaaaaaagtactcaattgga 379

                                                                       
Query: 181 ctttttattgctttttgagacaggttcaccatctaattgagactgacctcaaaatcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttttattgctttttgagacaggttcaccatctaattgagactgacctcaaaatcacct 439

                                                                       
Query: 241 gttcccctgt-tcttcctcctgagtgtccgggattacaggtgtgcaccaccacacctgcc 299
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttcccctgtctcagcctcctgagtgtccgggattacaggtgtgcaccaccacacctgcc 499

                                                                       
Query: 300 ctgattatactttgaagttgtccactaaaccagattgcattaaggttaatgtttaacatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgattatactttgaagttgtccactaaaccagattgcattaaggttaatgtttaacatg 559

                                                                       
Query: 360 tatttccttgctaaagactattcaataatgcaaaaataagcaaacaaaagaatcaagccc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatttccttgctaaagactattcaataatgcaaaaataagcaaacaaaagaatcaagccc 619

                                                                       
Query: 420 tcactctcaactgattagtaccagtctctgtctttgcttaccaatgggcataaattcaga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcactctcaactgattagtaccagtctctgtctttgcttaccaatgggcataaattcaga 679

                                                               
Query: 480 caattagttctaagggggggggaggctgtattattcaggaatttaaatacaa 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caattagttctaagggggggggaggctgtattattcaggaatttaaatacaa 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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