NNNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATGTTTATCTCTGAGCCCCAATTTTAATGGGGTTATTT
GATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATACATAATGGATGCTAG
TTCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACATAAGCTTTGAAAT
TTTATGAGATCCCATTTGTAGATTCTTAATTTTACAGCACAAGCCATTGC
AGTTCTATTCAGGAATTTTTCCCCCTCTGCCCATATCTTCGAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGCGGAGTTC
CTTAATCCACTTAGATTTCACCTTAGTACAAGGAAATAGGAATTGATCAA
TTCGCATTCTTCTACATATTAACTGCCAGATATGCCAGCATCATTTGTTG
AAAATGCTGTCTTTTTTCTCTGGATGGTTTTATCTCACTTGTCAAAGATC
AAGTGACCATAGGTGTGTAGGTTCATTTCTGGGTCTTCAATTCTATTCCA
TTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGGNATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTANNTATANNTATTANAAN
NANNANNNNNCNNNNNNANNATNANNNNNATTTGGTCTGGNATAACANTT
TTA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTTCTATTGCTCTAAGCACATCCCG
GTGTTATCAATTGGAGAACCAGCTATCAATACAGGATTTAGGGAATCTGT
TAGATCAAACTATAGATCACCAAGTAAAGTGTATGACCATTCCACAATGC
ACGATATATTCACATACTTTCCAAGAATCCCCATCATCATAGTCATCCAA
TCTCAGTTTCCTCTGTAATTGAAGTAAATCTAAGGAGGCTACATGGCTCT
CAGAGAAGGACGCACTATTTTGGGGTGCAGCTGTGGTAGGAAGGAAGGAG
CAGATATTAGGATGTAAAGTCAGTACATACATACATACATACATACATAC
ATACATACATACATACATATAAATGCAAAAAAGCTAAAATCAACTATAAA
TTGTGAACTTGTAACTTAACATTAACTTTAAGGACGAATATTTAGTTAGA
TTGATGATATATATTTGAGCCTAAGGTCAGGAGGCCTCATTCCATACTGA
CCAGGGTGAAGCTTACCACCATGGTGCTAGAAACACTTGCAGGGTAAATC
TTTTAATCTAACAGGACAGGACCACCAAATATGGACTGAATCAAAGTGAG
GTAGAGTTTACTTTTTTTTTTAAATTGGAATTTACAATTTTTGTAGAATG
TGGAAGCGGGACAGATTTTCCTCCCAAACTTGGACAGTTTGAGCAGGCAC
AAGGCCTTGG

Query= MSMg01no458_l19.g1 MSMg01no458_l19.g1 CHROMAT_FILE:
MSMg01no458_l19.g1 PHD_FILE: MSMg01no458_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:25 2005
         (681 letters)



>mm_chr1_29442485_29443569
          Length = 1085

 Score = 1263 bits (653), Expect = 0.0
 Identities = 679/695 (97%), Gaps = 14/695 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttctattgctctaagcacatcccggtgttatcaattggagaaccagctatcaataca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 191 attttctattgctctaagcacattccggtgttatcaattggagaaccagctatcaataca 250

                                                                       
Query: 61  ggatttagggaatctgttagatcaaactatagatcaccaagtaaagtgtatgaccattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 251 ggatttagggaatctgttagatcaaactatagatcaccaagtaaaatgtatgaccattcc 310

                                                                       
Query: 121 acaatgcacgatatattcacatactttccaagaatccccatcatcatagtcatccaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acaatgcacgatatattcacatactttccaagaatccccatcatcatagtcatccaatct 370

                                                                       
Query: 181 cagtttcctctgtaattgaagtaaatctaaggaggctacatggctctcagagaaggacgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagtttcctctgtaattgaagtaaatctaaggaggctacatggctctcagagaaggacgc 430

                                                                       
Query: 241 actattttggggtgcagctgtggtaggaaggaaggagcagatattaggatgtaaagtcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actattttggggtgcagctgtggtaggaaggaaggagcagatattaggatgtaaagtcag 490

                                                                       
Query: 301 tacatacatacatacatacatacatacatacatacatacatacata----------taaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||          ||||
Sbjct: 491 tacatacatacatacatacatacatacatacatacatacatacatacatacacatataaa 550

                                                                       
Query: 351 tgcaaaaaagctaaaatcaactataaattgtgaacttgtaacttaacattaactttaagg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgcaaaaaagctaaaatcaactataaattgtgaacttgtaacttaacattaactttaagg 610

                                                                       
Query: 411 acgaatatttagttagattgatgatatatatttgagcctaaggtcaggaggcctcattcc 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acgaatatttagttagattgatgatatatatttgagcctaaggtcaggaggcctcattcc 670

                                                                       
Query: 471 atactgaccagggtgaagcttaccaccatggtgctagaaacacttgcagggtaaatcttt 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atactgaccagggtgaagcttaccaccatggtgctagaaacacttgcagggtaaatcttt 730

                                                                       
Query: 531 taatctaacaggacaggaccaccaaatatggactgaatcaaagtgaggtagagtttactt 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 taatctaacaggacaggaccaccaaatatggactgaatcaaagtgaggtagagtttactt 790

                                                                       
Query: 591 tttttttt---aaattggaatttacaatttttgtagaatgtggaagcgggacagattttc 647
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttttttttttaaattggaatttacaatttttgtagaatgtggaagcgggacagattttc 850

                                              
Query: 648 ctcccaaa-cttggacagtttgagcaggcacaagg 681
           |||||||| ||||||||||||||||||||||||||
Sbjct: 851 ctcccaaaacttggacagtttgagcaggcacaagg 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1085
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1075
Effective search space:   721325
Effective search space used:   721325
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)