Query= MSMg01no459_a24.b1 MSMg01no459_a24.b1 CHROMAT_FILE:
MSMg01no459_a24.b1 PHD_FILE: MSMg01no459_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:50 2005
(395 letters)
>mm_chr1_103254821_103255615
Length = 795
Score = 656 bits (339), Expect = 0.0
Identities = 355/363 (97%), Gaps = 6/363 (1%)
Strand = Plus / Plus
Query: 9 ggaattcagctgttcactcatcttcaaaattgcagccatagtggttgagttatagacata 68
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggaatccagctgttcactcatcttcaaaattgcagccatagtggttgagttatagacata 268
Query: 69 aagcttttgaaataaagcttggaatataatgagctcaatacatgtaagctgttaatatac 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagcttttgaaataaagcttggaatataatgagctcaatacatgtaagctgttaatatac 328
Query: 129 agcaatattgcagaatgtcttccaagtctaaatgccaatatttatataaagcttttgctg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcaatattgcagaatgtcttccaagtctaaatgccaatatttatataaagcttttgctg 388
Query: 189 agctataaaaattggcatataaacatagtatatattcttagagtaatgttaggtctcaat 248
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agctataaaaattggtatataaacatagtatatattcttagagtaatgttaggtctcaat 448
Query: 249 gaatgtatgtaatatgtattttttcaatatttatcactttaattcatgtgtatatttgtg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaatgtatgtaatatgtattttttcaatatttatcactttaattcatgtgtatatttgtg 508
Query: 309 tgtgacagtgagtgtgatgatgatgatgatgatgatgatgatgacaatgtgtgtgtgtgt 368
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 509 tgtgacagtgagtgtgatgatgat-a-----atgatgatgatgacaatgtgtgtgtgtgt 562
Query: 369 gtg 371
|||
Sbjct: 563 gtg 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_a24.g1 MSMg01no459_a24.g1 CHROMAT_FILE:
MSMg01no459_a24.g1 PHD_FILE: MSMg01no459_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:50 2005
(302 letters)
>mm_chr1_103403095_103403796
Length = 702
Score = 576 bits (298), Expect = e-169
Identities = 301/302 (99%)
Strand = Plus / Minus
Query: 1 tatggtctctggctcatcaagattagattatcacaatcttttatactcattaaaaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatggtctctggctcatcaagattagattatcacaatcttttatactcattaaaaaatca 383
Query: 61 ggaatatgtgaaatgtgtattggaaagagttatgttcaaaacttctaaaaacaaatctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaatatgtgaaatgtgtattggaaagagttatgttcaaaacttctaaaaacaaatctag 323
Query: 121 agcatttcttgtttcagtcatctggaatattatttttgatggagttgttttttggaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agcatttcttgtttcagtcatctggaatattatttttgatggagttgttttttggaaagg 263
Query: 181 tcatatgaagaaagtactatttgggttatctaatgaacaacaatagaaggtgtgttaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcatatgaagaaagtactatttgggttatctaatgaacaacaatagaaggtgtgttaaca 203
Query: 241 gctttaaaatatatattctttaatcttttttattttatcatccagattttatccagctca 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gctttaaaaaatatattctttaatcttttttattttatcatccagattttatccagctca 143
Query: 301 tg 302
||
Sbjct: 142 tg 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
