BAC Information

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BAC

Clone NameMSMg01-459B04
Chromosome1 (Build37)
Map Location 146,961,228 - 146,961,553
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877
Downstream geneLOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459B04.T7 (MSMg01no459_b04.b1)MSMg01-459B04.TJ (MSMg01no459_b04.g1)
ACCAG544754AG544755
length745755
length of high quality
(start - end)
602 (46 - 647)326 (75 - 400)
definitionCHROMAT_FILE: MSMg01no459_b04.b1 PHD_FILE: MSMg01no459_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:51 2005CHROMAT_FILE: MSMg01no459_b04.g1 PHD_FILE: MSMg01no459_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATGTTTTCCCAAAAGGCCCCAGATAGGCAAACAGTTCTAAGCT
AAAATAACAATAATGAAGGAACTACCATCCCAGATTCCAAGATATATTAC
AGAACTACAGCAAGAAAACTGTGTCTTTCTTGCACACAAGCAGAACTGTA
GAGCAAGATAATTCTCAAAGAGAAGTACAAGTAGCTAATGCCACCTGACA
TTTGTCAAAGATGCAAAATACTCCGGAGAAAACTCAACATGTTTATCAAA
TGTTGGGGGAATAAGTTCCTCTAGATCCAAAAGAATGCAAATAGACTCCC
ACGATCATCTTGCATACAAACCAACTCCAAATGGATCAAAAAGCTTTAAT
ATAAAACCTGAAATGCTGAGATTGGTGGAAGAAACCTAGGCAGTAGGCTA
CAGGATATAAATATAGAAGAGGACTTCCAACTAGGGTCCTGTTCCTCAAG
AGTTAAGGCAGACCATTTACTAATGGGAGCTCATAAAACTGAGCTAACAA
CTAAAGAAACCATCAACTGATTAAAGAGAAAGAAATAAACTTTCTAACAA
TAGAAATGCAATATAATAGAGTANAAAACTCTCCTAGAAAGAAGTAAAAA
TGATTAAGAAATATCTCAAAATGTACATTATTTTTAACAACTAGAAATAT
GTCAACTAAAATAAAAATGAGATTTTTCTCACCACAGTCAGAGAN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACTTGAGAAAAGCATTGCTAAAAAT
CACAATTATATAAATTATGATATTTTAGATTACTGTTGATGTAATGGGGA
TGTATAAATGTCTAACACAATTGTTACTCATATAATAAAAGAAGGTTTAG
TATAGAGAATGATAAAATATGTTCTGGCTAGGAATGATATGGAATTTGGC
TTTGACATTAAAATCTATATTTCGAAATGAGTGTTAATTAATATTCATCC
TATTTTTGATTGACATATTGCAGTTAGAATTTTGTTTTATTATTCACATC
TAGCTTTTTCTATCTGAATGCATGAAGAAAGAAGTTAGGATATATAGAAA
TTCATGCTTAACTCAATATAAGACAAAAAACTTAGCAAAAACCACTGATA
AATTATTCCTCCACCTGCCAAATGAGTCAGTTCAAGCCACATTAGATTTT
ATTAAATGTCGGTTTATTGCTAAACCACCCCTGTCTCATTTCATTGGTCC
CAACGAACTGAGTTTATCAAAGTTCCTATTGCCCACCCTCGTCTTCGCCC
CTTATTTCCTTATACTTCCCTCCCCGCCGAATTATTCCCCTCTTCCCCCT
TTCCCTTTTCCTTCCCTTCCTTCTTTTCCCTTCTTTCTTCGTTCATCCTC
GTCTCCCCCCACCTTTCTTTCCGTTTCTCCTTTCCCTCCTTCTCCCCTCC
CACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_b04.g1 MSMg01no459_b04.g1 CHROMAT_FILE:
MSMg01no459_b04.g1 PHD_FILE: MSMg01no459_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:51 2005
         (326 letters)



>mm_chr1_146961028_146961753
          Length = 726

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttgagaaaagcattgctaaaaatcacaattatataaattatgatattttagattact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttgagaaaagcattgctaaaaatcacaattatataaattatgatattttagattact 260

                                                                       
Query: 61  gttgatgtaatggggatgtataaatgtctaacacaattgttactcatataataaaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgatgtaatggggatgtataaatgtctaacacaattgttactcatataataaaagaag 320

                                                                       
Query: 121 gtttagtatagagaatgataaaatatgttctggctaggaatgatatggaatttggctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttagtatagagaatgataaaatatgttctggctaggaatgatatggaatttggctttg 380

                                                                       
Query: 181 acattaaaatctatatttcgaaatgagtgttaattaatattcatcctatttttgattgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattaaaatctatatttcgaaatgagtgttaattaatattcatcctatttttgattgac 440

                                                                       
Query: 241 atattgcagttagaattttgttttattattcacatctagctttttctatctgaatgcatg 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 atattgcagttagaattttgttttattgttcacatctagctttttctatctgaatgcatg 500

                                     
Query: 301 aagaaagaagttaggatatatagaaa 326
           ||||||||||||||||||||||||||
Sbjct: 501 aagaaagaagttaggatatatagaaa 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)