ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGCTCACTCTCCAGCACCATATCTGCCTGGATGCTGCCATATTTC
CTGCCATAATGATAATGGACTGAACCTCTGAAACTTTAAGCCAACCCAAA
TTTAAATATTTGCCTTTATAAGAGTTGCCTTGGTCAAGATGTCTCTTAAC
AACAATGGAAACCTTAATTAAGACATGTTGTAGTCTCCATCAGTTACAAA
GACAAGATCACCTGTAGAAGAATGGAGACTACATTTATCTATGGATATTA
TATTAAAATAATTTATTTATAGATTTATAGATTATTAGAAATTTTTATGT
TGGTTTAATCAATTACTCAAAAATCAATTAATCCCTTTTTCTCCAGTCAC
CATGATTATACTAGCACTAAAATGTCAGGTAGGTTTTTAGTACCAGACAT
GGTATCTTTTTGGTTAGGTCTTAAGTCCAATTAGAGAGTTACTGACTACC
ACCAAGGTATCTGTGACAGTACTGCTCAATAGGGTTCTCATACCATACTG
GACATTGAGGTGGTTAATCAATGGATAAGAGCATTGATTACCTCCTTCCG
CTGTATGTTTCCATAATACTTTTTGTTACTAAAAAAACTAGTAACTCTGA
ACGGCCTATTCAAGTCTGTCTCCTTTTAAAAAACTATCCTATCTGAAATA
AACAAAAGGGACAAATTTTACTTATATTTACACTCGGGTATAATTAAAAT
GCG

CAATGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCCGCGGAATTCCACACCTTTCTAAGCTTTTTAGACTTC
TCATAAATATCAAAATTCACTTAACAACAAAGGTAGCTGTGTTTAAATTT
TATTATTTATGCAATTTCTTCCAGTAACTGTAGATTAGTACATTGAATTC
AATCATATTCAAATTATCCAAAACATAGGCAATATGATCATATTTTTGTA
TTAATAATGATAATTGTATCATAAATGATTCTTAGTCAATTCTCAGCAAA
GTTCTTGCAGAATTCTAAAATCTAATGAGCACAATATTACCTGTCTGTTT
TTCTGCTGATATTAGGATATTCTGCACCCCAATCAGAATGCCCAATTAAG
TTCAAATTACAGCGATCTGGGGATTTTTTTCAGCCAATAAACCTAACTTC
TTCCAAATCCCAGCTATGAACCACTTTCAAAGGATTGTAATATACATTAT
AAGCCTACTTTAACAGTGGGCTTTGTGCACACATTTGCAATGTAAGTTGC
TTTTCTTATCCCTGTGACTTAGGGTTATCAAAAAGCACCCTAAGTGAGGC
CAGCTAAATTTTGACACTAGTTTACCGGAACATATTTTCAACCCTGAGCT
GGTCATTTATTAAAAAGTCTATCAATCTTGTTTCTTTTGTGGTCCCCCCC
GCCCTTCCTATCATTGATGCATACCCCCTTTTTCTCCTTTCTTN

Query= MSMg01no459_c04.g1 MSMg01no459_c04.g1 CHROMAT_FILE:
MSMg01no459_c04.g1 PHD_FILE: MSMg01no459_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:56 2005
         (483 letters)



>mm_chr1_110981851_110982734
          Length = 884

 Score =  864 bits (447), Expect = 0.0
 Identities = 468/475 (98%), Gaps = 1/475 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattc-cacacctttctaagctttttagacttctcataaatatcaaaattcacttaaca 68
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattcacacacctttctaagctttttagacttctcataaatatcaaaattcacttaaca 625

                                                                       
Query: 69  acaaaggtagctgtgtttaaattttattatttatgcaatttcttccagtaactgtagatt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acaaaggtagctgtgtttaaattttattatttatgcaatttcttccagtaactgtagatt 565

                                                                       
Query: 129 agtacattgaattcaatcatattcaaattatccaaaacataggcaatatgatcatatttt 188
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtacattgaattcaaccatattcaaattatccaaaacataggcaatatgatcatatttt 505

                                                                       
Query: 189 tgtattaataatgataattgtatcataaatgattcttagtcaattctcagcaaagttctt 248
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 tgtattaataatgataattgtatcataaatgattcttagtcaattctcagcagagttctt 445

                                                                       
Query: 249 gcagaattctaaaatctaatgagcacaatattacctgtctgtttttctgctgatattagg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcagaattctaaaatctaatgagcacaatattacctgtctgtttttctgctgatattagg 385

                                                                       
Query: 309 atattctgcaccccaatcagaatgcccaattaagttcaaattacagcgatctggggattt 368
           |||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct: 384 atattctgtaccccaatcagaatgtccaattaagttcatattacagtgatctggggattt 325

                                                                       
Query: 369 ttttcagccaataaacctaacttcttccaaatcccagctatgaaccactttcaaaggatt 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttcagccaataaacctaacttcttccaaatcccagctatgaaccactttcaaaggatt 265

                                                                  
Query: 429 gtaatatacattataagcctactttaacagtgggctttgtgcacacatttgcaat 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaatatacattataagcctactttaacagtgggctttgtgcacacatttgcaat 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)