BAC Information

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BAC

Clone NameMSMg01-459C07
Chromosome1 (Build37)
Map Location 154,486,708 - 154,487,077
singlet/doubletsinglet
Overlap genenone
Upstream geneNiban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1
Downstream geneEG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459C07.T7 (MSMg01no459_c07.b1)MSMg01-459C07.TJ (MSMg01no459_c07.g1)
ACCAG544807AG544808
length754610
length of high quality
(start - end)
368 (67 - 434)---
definitionCHROMAT_FILE: MSMg01no459_c07.b1 PHD_FILE: MSMg01no459_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:56 2005CHROMAT_FILE: MSMg01no459_c07.g1 PHD_FILE: MSMg01no459_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAATTTCCGCAAATTGACATTAAAATCGACCATCACACCTTCC
TGAGGAACTCATGGTCACTTCCCTCTGTGCCTCCTTAAACCCTGTAAGGC
AGGAAAATTATAGCAGTAAAATCACTAAAAGTAATTCATAAAAACGTCAG
CTTTAACTGTCCTTTTTCACTTTTTAAAGTGGGGCTTTCTAAAAAGACGA
ACTTAATAGAAGTGGCTTACAAGGCATTTCCCTGGTTTGCTGTTCTAACC
TTTGTCAGGCCGTGTTCATGTCTGTTCATTCTCTCCCCCCCTTCTCGTGT
GCACACACACATTTCTTTATTAAATGTGTTGTAATACATTTAGTGTGTGT
GTGTTTCCTCATGCCATCACGAGCATGTGGAGGTCAGAGAACAACTTGCA
GAAGTTGGCTCTCTCCCTCTACCATATGGGTTCTGGAGACCAACTCGGCT
CATAAGGCCTTGCTAGCAAGAGGCTTCACCCACTTAATCATCTAGCTGCA
CATTTATTTATTTAATCACCTACTTATCTGACATTAGGTCCCGCTCTTTC
CAGGCTTTCCTTTGATCGCACTATTGCTATTACGAATTGTTTTTTACTTT
TTATTTTCCTGCCCTCGTTTCCCACTAACTGTGACCCCATTTAAGGTCTC
GTACCATTTTTTGCCCCCACCTTTTATCCCCCGCCTTACTCCTTTTTTTC
TTGT
NTTTTTCNNNNNNNNCCAAAACANNNNNANNNCNGNNNNNCCNCCCTTTT
CCCACNACACCCNAANNNNNNNACNCCNNANNNNNAATTTTTCCCCCCCC
CCNNCNNNNNAAAAANNNCCCNNNCCCNNNCCCCCCCCCCCCNCCCCCCC
CCCCCCCCCNNNNNNNAAAANNNNNCCNNNNCNNNNCCCCCCNNCNCCCN
NNNCCCCCCCCCCCCCACACCCCCACAAAAATTTTTTAAATTGTACGCCC
TACNGTTGTATGGAGAGGGGGGGGGGACACCCCCNAACAAACCGNNCCCC
CCNNNAAATNNNNNANNNNCNCCCCAAGACCCAATTNAAAAAAAAAANNN
NNNNNCCTTTTTCCCCTTGCACACCCTAAGACACAAATACCTCAAAAAAC
CCCAAACCCCCCCNNCNNNNNNCCCNNNNNCNNCCCCCNCCCCCCCCCCC
NCCCNCCCNCCCNCCCNNNCCCCCCCCCCCCCCCCCCCCNNCCCNNCNNN
NNNNNNCNNCCNCCNCNCCCCCCCCCCCCCCCCCNCNCCCCCCCCCCCCC
CCCCCCCCTCCCTCCTCCCCCCCCNCCCCCCCNNNNCCCCTTACTTCCTT
TTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_c07.b1 MSMg01no459_c07.b1 CHROMAT_FILE:
MSMg01no459_c07.b1 PHD_FILE: MSMg01no459_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:56 2005
         (368 letters)



>mm_chr1_154486508_154487277
          Length = 770

 Score =  634 bits (328), Expect = 0.0
 Identities = 359/370 (97%), Gaps = 2/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaattgacattaaaatcgaccatcacaccttcctgaggaactcatggtcacttccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caaattgacattaaaatcgaccatcacaccttcctgaggaactcatggtcacttccctct 511

                                                                       
Query: 61  gtgcctccttaaaccctgtaaggcaggaaaattatagcagtaaaatcactaaaagtaatt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtgcctccttaaaccccgtaaggcaggaaaattatagcagtaaaatcactaaaagtaatt 451

                                                                       
Query: 121 cataaaaacgtcagctttaactgtcctttttcactttttaaagtggggctttctaaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cataaaaacgtcagctttaactgtcctttttcactttttaaagtggggctttctaaaaag 391

                                                                       
Query: 181 acgaacttaatagaagtggcttacaaggcatttccctggtttgctgttctaacctttgtc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcgaacttaatagaagtggcttacaaggcatttccctggtttgctgttctaacctttgtc 331

                                                                       
Query: 241 aggccgtgttcatgtctgttcattctctcccccccttctcgtg--tgcacacacacattt 298
           |||||||| |||||||||||||||||| |||||||  | | ||  |||||||||||||||
Sbjct: 330 aggccgtggtcatgtctgttcattctccccccccccccccatgcgtgcacacacacattt 271

                                                                       
Query: 299 ctttattaaatgtgttgtaatacatttagtgtgtgtgtgtttcctcatgccatcacgagc 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 270 ctttattaaatgtgttgtaatacatttagtgtgtgtgtgtttcctcatgccaccacgagc 211

                     
Query: 359 atgtggaggt 368
           ||||||||||
Sbjct: 210 atgtggaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 770
Length adjustment: 9
Effective length of query: 359
Effective length of database: 761
Effective search space:   273199
Effective search space used:   273199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)