Query= MSMg01no459_d10.b1 MSMg01no459_d10.b1 CHROMAT_FILE:
MSMg01no459_d10.b1 PHD_FILE: MSMg01no459_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:03 2005
(495 letters)
>mm_chr1_150111642_150112536
Length = 895
Score = 903 bits (467), Expect = 0.0
Identities = 485/491 (98%)
Strand = Plus / Minus
Query: 5 gaattctaatatttgaaaaatttagagctattctttatgcaatggcagcaattgagtcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 637 gaattctaatatttgaaaaatttagagctattctttatgcaatggcagcaattgaatcca 578
Query: 65 aattttgtggcacagtaattaatgttactgtttttaaatttcttgatttttactttgcat 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 577 aattttgtggcacagtaattaatgttactgtttttaaatttcttgagttttactttgcat 518
Query: 125 aaaatatttatcaatacttttagatttcctatgactctatgattaactatttaaatctac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaaatatttatcaatacttttagatttcctatgactctatgattaactatttaaatctac 458
Query: 185 tgatcaactgtatgagttaaataattttgtcatagtttaaaaaataaatgaattagaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgatcaactgtatgagttaaataattttgtcatagtttaaaaaataaatgaattagaatt 398
Query: 245 aaaattgggaaggagatacaaaagtggataatataattgctgttattattttaacttaaa 304
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 397 aaaattggaaaggagatacaaaagtggagaaaataattgctgttattattttaacttaaa 338
Query: 305 gcatcctgattcacaggaagacctgacttggtataacttaatttttcttgtaagtgaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcatcctgattcacaggaagacctgacttggtataacttaatttttcttgtaagtgaaga 278
Query: 365 aaaagtgaatgttagttgagttctcagattcttggaagttcatggtgaagtggttgctct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaaagtgaatgttagttgagttctcagattcttggaagttcatggtgaagtggttgctct 218
Query: 425 agacacttttagattttcttttgctttgttttgtttttgtttaaattttgttattgtttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agacacttttagattttcttttgctttgttttgtttttgtttaaattttgttattgtttt 158
Query: 485 acagatctagg 495
|||||| ||||
Sbjct: 157 acagatatagg 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_d10.g1 MSMg01no459_d10.g1 CHROMAT_FILE:
MSMg01no459_d10.g1 PHD_FILE: MSMg01no459_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:03 2005
(432 letters)
>mm_chr1_149953853_149954684
Length = 832
Score = 723 bits (374), Expect = 0.0
Identities = 419/434 (96%), Gaps = 3/434 (0%)
Strand = Plus / Plus
Query: 1 tctcacatccctggtgtctgagactttctagataccccacttcacacatacacatacact 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 tctcacatccctggtgtctgagactctctagataccccacttcacacatacacatacact 261
Query: 61 gctacatattcctactcattctcttggccctctggggtttctctcctgactcccaccata 120
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctacttattcctattcattctcttggccctctggggtttctctcctgactcccaccata 321
Query: 121 cttgatcctgcccccccttttctgtaaactcacataattgtccaagtgatactaaattta 180
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 322 cttgatcctgcccccc-ttttctgtaaactcacataattgtgcaagtgatactaaattca 380
Query: 181 atttttataattttgtgttatggaaactgagatatttgattttagcagaagaaacaacat 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttataattttgtattatggaaactgagatatttgattttagcagaagaaacaacat 440
Query: 241 tttttttccttatgaaaagatttaaaatcaattttgtgggatgaataatgatcaaacata 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaaatccttatgaaaagatttaaaatcaattttgtgggatgaataatgatcaaacata 500
Query: 301 tcagggataatgttaagaactcataaaattatattataaa-aatgactattttagccata 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tcagggataatgttaagaactcataaaattatattataaagaatgactattttagccata 560
Query: 360 aaa-tgttctaaagattaactctaggagtatatatattctgtataggactatatcattgt 418
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 561 aaaatgttctaaagattaactctaggagtatatatattctctataggactatatcatttt 620
Query: 419 gctaaattcccagc 432
||||||||||||||
Sbjct: 621 gctaaattcccagc 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
