BAC Information

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BAC

Clone NameMSMg01-459F21
Chromosome1 (Build37)
Map Location 51,282,765 - 51,283,126
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041993, Tmeff2
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F21.T7 (MSMg01no459_f21.b1)MSMg01-459F21.TJ (MSMg01no459_f21.g1)
ACCAG544978AG544979
length759762
length of high quality
(start - end)		466 (44 - 509)362 (75 - 436)
definitionCHROMAT_FILE: MSMg01no459_f21.b1 PHD_FILE: MSMg01no459_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:16 2005CHROMAT_FILE: MSMg01no459_f21.g1 PHD_FILE: MSMg01no459_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTTAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAATGTT
CAGCATCCTTAATCATCAGGGAAATTCAAACCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAG
ATGCTGGCCTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCTGTTCCTCAGA
AAACTGGACATAGTACTACCAGAGGATCCTGCAATACCTCTCCAGGACAT
ATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATACTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
ATACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGTATCATCCTGAGTGAGGGATCCCAGCTCCAAGGA
ACTCCCCAATATGTACTCCCCGATAAGGGAAATTACCCCCAAACCGAGGA
TACCCCGATATAAAATAAATTTGGCAAAACCGGAACTCCCAAAAACGAAA
CCAAAGGGGACCCCTGCCCTTCTTTAAATGGAAAAAAACCCCGAAGGGGT
CTAAAAATT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAGTCTTCTACTTTCACATTTCCC
TACCATCAACTTCTTGGCTGTAGAAGCGTTCCAATCTGGAGCCTGTCGGA
TGCTAGGCAGGAGTTCTGCCACTGAGCTCCATCACCAGCCCTTTTTACAG
GTTTTCTTTTGAGACTATATCTTGACAAGTTTTCCAGGCTCACCTGGAAC
TTCTGATCCTCCTTATATCAGTTTCCTTAGTAGCTGGGATTATAGACCTG
TGACAAGAAGCCACATGTTCTCAAACTGCTGTAAGGGAAATGGATAGAAT
TTTTATTTAGATGGAAGGTGGCTCCCTACTTTTTGACTTGGAGGAGTTGG
GACAGTAATGGGAGTGGTGATACAAATTGTATGATAGAGAAGAGTGCTAC
ATGGAGCATGCGTGAGTTTCTTTTGTTTTTCCCTCCTCCTCCCTTTTTTC
CTCCCCCCCCTCCTCTTTATTCCACTTCCTCCCTCTCTCCCTTTTTATTT
TCACTCCATATCTTCCCTTTTTCACTTTTCTGTTTATCCCTCCGTCATTC
CCTCCCCTCATTCCCCTCTATTTTTTTTTTTTCTTCTTACGCTCTTCCAT
TTCATTTTTCTTGCCCCTTTTCTTTTTCTCCCCCTTCATTACGTCATTTT
TACTATGATTTCTTCCCCTCCCCCCCCCCTTCTATTTTCCTCTCTTTTCC
CTCTTTCCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f21.g1 MSMg01no459_f21.g1 CHROMAT_FILE:
MSMg01no459_f21.g1 PHD_FILE: MSMg01no459_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:16 2005
         (362 letters)



>mm_chr1_51282565_51283326
          Length = 762

 Score =  661 bits (342), Expect = 0.0
 Identities = 357/362 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagtcttctactttcacatttccctaccatcaacttcttggctgtagaagcgttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagtcttctactttcacatttccctaccatcaacttcttggctgtagaagcgttccaa 260

                                                                       
Query: 61  tctggagcctgtcggatgctaggcaggagttctgccactgagctccatcaccagcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggagcctgtcggatgctaggcaggagttctgccactgagctccatcaccagcccttt 320

                                                                       
Query: 121 ttacaggttttcttttgagactatatcttgacaagttttccaggctcacctggaacttct 180
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttacaggttttcttttgagactacatcttgacaagttttccaggctcccctggaacttct 380

                                                                       
Query: 181 gatcctccttatatcagtttccttagtagctgggattatagacctgtgacaagaagccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gatcctccttatatcagtttccttagtagctgggattatagacctgtgacaggaagccac 440

                                                                       
Query: 241 atgttctcaaactgctgtaagggaaatggatagaatttttatttagatggaaggtggctc 300
           |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 atgtcctcaaactgctgtaagggaaatggatggaatttttatttagatggaaggtggctc 500

                                                                       
Query: 301 cctactttttgacttggaggagttgggacagtaatgggagtggtgatacaaattgtatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctactttttgacttggaggagttgggacagtaatgggagtggtgatacaaattgtatga 560

             
Query: 361 ta 362
           ||
Sbjct: 561 ta 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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