BAC Information

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BAC

Clone NameMSMg01-459M02
Chromosome1 (Build37)
Map Location 155,070,358 - 155,070,876
singlet/doubletsinglet
Overlap geneLamc1
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
Downstream geneEG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459M02.T7 (MSMg01no459_m02.b1)MSMg01-459M02.TJ (MSMg01no459_m02.g1)
ACCAG545273AG545274
length826740
length of high quality
(start - end)
199 (69 - 267)520 (83 - 602)
definitionCHROMAT_FILE: MSMg01no459_m02.b1 PHD_FILE: MSMg01no459_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:48 2005CHROMAT_FILE: MSMg01no459_m02.g1 PHD_FILE: MSMg01no459_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATCTTCCATCTCACAAAGTATCAGGAGAGAAACAACTCCAGAGA
GTTGTCCTCTGACTTCTACATTTGTATTTTGACACATGTGTCTTTGTTTG
TAAGCACCAAACACAAACACACGCACACACACACACACTTAAAAAAAAAG
AACCTAGGGTATATAATAAATAGTGTTTGTGTGCATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTCCCCCACTCCCTCTTCCTAACCCCCCCCTCCG
ACTTTCCCTCTNGTGTTTTTTTTTTTCCTCTTCGCCGCGCCCACTTTGGA
TCTCACATTCGTTTTCACCCATCATATATTTTAGCTTTCTATTTTCATCT
CCTCTCTCACCTTCGTTTCATCTTCATTTTCTTTTATTTCGCTTCTCCCC
ATTCCGGCGTGTTACCATTACCTTACTACTTCACAACACTCCTTTCTCAT
ATCCATCCCTTATTTTGTCATTAACTCTACTCTATACTTTATATCCTTCA
CACCCCTATTTCCTCCCATTCCCTCCCCTTCCTCCTTTATCCCCCTTCCC
CTATTTCCACTCCTATTTTCACTTTACTATTTCCTCGTATCTCTTCTCTT
TCCACTACACCTATTTTCCTTCGTATTTTCGCCAATCTTTCCTTCTTTTC
CTCGCTCTTCTATCATTTCATTTTTTTATCCCATCCTCCGCGTAAAAACC
CACCTCCCCCTATCTTATAACTACCTACCGCCTTACCCCACCTTTTTATT
CCCTTCCCCCCATATTTTCCTATTAN
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAGTGCAGTCAGGTTC
AAGTATTATTTTATTCTCCCACTGAGCCTTTCTCTTCAAATCCCTTAAAG
ACGCTCCACCGGCAGGCAGAACTAAGAGGAAATGGCTGTTTAACTGTAGG
CCGGACCTTGGCCATAGTGGCATCCCTAGCTGGCAGCTCATCTCAGCCCC
AGGGAAGGCACCTAAGTACTTGAACTTAATAGAGTCCCATTCGCCTTCAC
TCTAGAATCGACAGCCTATCAGTGTCGCGCCGATGCAAGCTGCCCTTACA
AGGTTCTGCCAAGCAAGACACTGTGTACAAGGTGTCTTTAAATAAGCAAG
AGCTAAACAAAACATTAATATGAATGCCTTAATGATGCTTTTAGAGAATG
TGACTCTGCATCAGTGGACTCAGCCTGCAAGCGGTGGCTGCAGCAACCCT
TCTGCTACTTACCTAGCTGATCCAAGAGGTTGTTCAGCTGGCTGAGGAGG
CTGCTGACAGAGTTTTTGTGCTTTCTGGCATTGAGCTCAGCCTCCTGAGC
GGCTTGCGAAGCCCTGTAATTGGTAAAAACGTACAAATCCCGCCCGGAAA
ACCTCCCTCCACCCTCGCGGGTTCTTTTCTTCTCCTCCCTAACAAAAATT
CTTCCCCCCCCCCATTGGTCCACCCATCATCACCGTNCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_m02.g1 MSMg01no459_m02.g1 CHROMAT_FILE:
MSMg01no459_m02.g1 PHD_FILE: MSMg01no459_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:48 2005
         (520 letters)



>mm_chr1_155070158_155071078
          Length = 921

 Score =  959 bits (496), Expect = 0.0
 Identities = 514/520 (98%), Gaps = 3/520 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagtgcagtcaggttcaagtattattttattctcccactgagcctttctcttcaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaagtgcagtcaggttcaagtattattttattctcccactgagcctttctcttcaaatc 260

                                                                       
Query: 61  ccttaaagacgctccaccggcaggcagaactaagaggaaatggctgtttaactgtaggcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ccttaaagacgctccaccagcaggcagaactaagaggaaatggctgtttaactgtaggct 320

                                                                       
Query: 121 ggaccttggccatagtggcatccctagctggcagctcatctcagccccagggaaggcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaccttggccatagtggcatccctagctggcagctcatctcagccccagggaaggcacc 380

                                                                       
Query: 181 taagtacttgaacttaatagagtcccattcgccttcactctagaatcgacagcctatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtacttgaacttaatagagtcccattcgccttcactctagaatcgacagcctatcag 440

                                                                       
Query: 241 tgtcgcgccgatgcaagctgcccttacaaggttctgccaagcaagacactgtgtacaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcgcgccgatgcaagctgcccttacaaggttctgccaagcaagacactgtgtacaagg 500

                                                                       
Query: 301 tgtctttaaataagcaagagctaaacaaaacattaatatgaatgccttaatgatgctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctttaaataagcaagagctaaacaaaacattaatatgaatgccttaatgatgctttt 560

                                                                       
Query: 361 agagaatgtgactctgcatcagtggactcagcc-tgcaagcggtggctgcagcaaccctt 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 agagaatgtgactctgcatcagtggactcagccctgcaagcggtggctgcagcaaccctt 620

                                                                       
Query: 420 ctgctacttacctagctgatccaagaggttgttcagctggctgaggaggctgctgacaga 479
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttacttacctagctgatccaagaggttgttcagctggctgaggaggctgctgacaga 680

                                                   
Query: 480 gtttttgtgc-tttctggcattgagctcagcctcctgagc 518
           ||||||| || |||||||||||||||||||||||||||||
Sbjct: 681 gtttttg-gcctttctggcattgagctcagcctcctgagc 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space:   464610
Effective search space used:   464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)