BAC Information

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BAC

Clone NameMSMg01-460D12
Chromosome1 (Build37)
Map Location 16,678,881 - 16,679,326
singlet/doubletsinglet
Overlap geneLy96
Upstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70
Downstream geneLOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460D12.T7 (MSMg01no460_d12.b1)MSMg01-460D12.TJ (MSMg01no460_d12.g1)
ACCAG545628AG545629
length706721
length of high quality
(start - end)
452 (61 - 512)485 (70 - 554)
definitionCHROMAT_FILE: MSMg01no460_d12.b1 PHD_FILE: MSMg01no460_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:24 2005CHROMAT_FILE: MSMg01no460_d12.g1 PHD_FILE: MSMg01no460_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTC
CAGGTTTTCACAGCTATATAGAAAGACCCTGTCTCAAAACAGATTTCAAT
AGAGTAATAATTACTGCATAAATCTAAAATCACTATTCGAAATCAAATAA
AATCATTATTTGTCAAGTGACTCATACAGTGAATTCTAAAATAACTTTCA
TTTTGCAAATTAAAAAAAAGTGAGGCTGAGAATGTCTAAGTATTTTGCTC
AAGGTCACACAGTTGGGGAGGAAGAAGGATGCTTCCAAGAGCACTCTAGG
ACCACAGGCTGGAGCTACAACCCCACCAGGAAGCACTGTGGGTTAGCCTC
CTCAAGAGGAACCAGTTTGTGTCGGGGCTGGTACTCAGAAGCAAACTAGA
ACTAAGAAGAACCTGAAACCGAGCTCCGAGTGGAGAGAGCTTAACCACAA
GACAGCAACAGAGGTAAAAAGCAATTCAGAGGTCCTGGGGAAACGCGGGG
GGGGGGGGGGGGNNNNTNNTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTT
TNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTNTTNTTTT
TTNNTTTTTNNNTTTTTTTTTTTTGTTTTTTTTTTTGTTTGTTTTTTTTT
TTTTTTTTTTGTTTGGTTTTTGTTGGTTTTTTTTTTTTTTTTTTTTGTTT
TTTTTT
ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCCCCTTCTTCTATGTATTATTCTTAGGTT
TGGATTTTCATACACATGGTCCCATATTTCCTGGATGTTTCAGATTTAGT
ATTTTCTTTGAGCACTGTAGCAATTTCTTCTATTGTATCTTCTTCTATGC
CTGACAGTCTCTGTCCCATCTCTCTCTTTTTTTTTTTTTTGTTTTTGGAA
AAGTTATTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATT
CCAAAGTCCCCTATACCCTCCCCCCACCCTGCTCCCCTACCCACCCACTC
CCACTTCTTGGCCCTAGCGTTCCCCTGTACTGGGGCATATAACGTTTGCT
AGACCAAGGGGCCTCTCTTCCCAATGATGGCCTATCTCTTATACTCTGTT
GGTGATGCTTGCATCTGTACTTCCTGTTTATTTACCTAGATCTTCCATCT
CCAGGATTTCCTCAGTTTGTGTTTTCTTTAAAGCTTTCATTCCCATTTTC
AGGGCTTGAACAGTTTTATTCATTTTCTTCACCTGTTTGGTTTATCCTGG
CTTTCTTTTAAGGGATTATTGAATTTTCCCCTTGGTTGTGTTGGTTTTTC
TTGAGATTCCTTTCACGGATTATTTTTTTTCTTCCTTTTATGAGCTTTAT
CCTTTGGCCCATATGCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_d12.b1 MSMg01no460_d12.b1 CHROMAT_FILE:
MSMg01no460_d12.b1 PHD_FILE: MSMg01no460_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:24 2005
         (452 letters)



>mm_chr1_16678475_16679326
          Length = 852

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%), Gaps = 2/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tagaaagaccctgtctcaaaacagatttcaatagagtaataattactgcataaatct-aa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 852 tagaaagaccctgtctcaaaacagatttcaatagagtaataattactgcataaatctaaa 793

                                                                       
Query: 68  aatcactattcgaaatcaaataaaatcattatttgtcaagtgactcatacagtgaattct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aatcactattcgaaatcaaataaaatcattatttgtcaagtgactcatacagtgaattct 733

                                                                       
Query: 128 aaaataactttcattttgcaaatt-aaaaaaaagtgaggctgagaatgtctaagtatttt 186
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 732 aaaataactttcattttgcaaattaaaaaaaaagtgaggctgagaatgtctaagtatttt 673

                                                                       
Query: 187 gctcaaggtcacacagttggggaggaagaaggatgcttccaagagcactctaggaccaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gctcaaggtcacacagttggggaggaagaaggatgcttccaagagcactctaggaccaca 613

                                                                       
Query: 247 ggctggagctacaaccccaccaggaagcactgtgggttagcctcctcaagaggaaccagt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggctggagctacaaccccaccaggaagcactgtgggttagcctcctcaagaggaaccagt 553

                                                                       
Query: 307 ttgtgtcggggctggtactcagaagcaaactagaactaagaagaacctgaaaccgagctc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttgtgtcggggctggtactcagaagcaaactagaactaagaagaacctgaaaccgagctc 493

                                                                       
Query: 367 cgagtggagagagcttaaccacaagacagcaacagaggtaaaaagcaattcagaggtcct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cgagtggagagagcttaaccacaagacagcaacagaggtaaaaagcaattcagaggtcct 433

                                     
Query: 427 ggggaaacgcgggggggggggggggg 452
           ||||||||||||||||||||||||||
Sbjct: 432 ggggaaacgcgggggggggggggggg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)