BAC Information

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BAC

Clone NameMSMg01-460G12
Chromosome1 (Build37)
Map Location 79,759,085 - 79,759,556
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3, Wdfy1
Downstream geneMrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460G12.T7 (MSMg01no460_g12.b1)MSMg01-460G12.TJ (MSMg01no460_g12.g1)
ACCAG545771AG545772
length2,020713
length of high quality
(start - end)
---484 (67 - 550)
definitionCHROMAT_FILE: MSMg01no460_g12.b1 PHD_FILE: MSMg01no460_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:38 2005CHROMAT_FILE: MSMg01no460_g12.g1 PHD_FILE: MSMg01no460_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCAAAACTCTATCATCGCTANNTNACACGACAGAGTATGTNNNNCGC
GTCTGTCTTTCTCTACTCGTGTAANCACGTGTNTCGCCAGTCGTGAGAGT
ATACTAGTGATCGCTGATGCACTACGCTGCGTTCACTATCACCAGACAAG
AGACATCACATCCACACTACTCAGCCNCCTCATATGNNATCACACCGCCC
AGCGCTACAGNACNACACTGCGTCGTACTTCGCTGTNCGATTACAAGACG
CATGCTGATATGATGTGGATATGATATATATTACGATCAGATAGCGAGAC
ATGTGATGCTGCTTAATATACGACGCGTGTGCTGTTCGTGTGGTGCGNCG
GCGTGTCGCGCNGGCGAGNCGTCGCTACGGCCATTGTATGTTGTTTCTCG
GNCGTGTAATCACATGTCATACACGGCATACACGCGACTAGAGTACAAGT
ATGACGAGATGATGCAGGNCAATAATAAGCGCGCGTAAGATCATCCTCAG
ACACGAGCGACAATCTTCGTATGTTACTGCTTNACGTGAAGTGATTATGT
ACNTNCATCTCCCTGCCGATCCATGCTGATAGATGCGCATGTAGATCGTA
CGATGCTGNTAGTGCATANATGAGTGATATCTGCTGACACGCAATATGAG
ACTCATACATTCAGCTGCATACGTGATACTACATAATGACATACATTAAT
GATNAAGCAACTCTCACTGTTACTTCTANTACTGTTCGCTTAGCGTGTGC
TACTGCCGTTATGCTGCGCGTGCTATGTGCATCGCGATGCTAGTGTTCGG
TCTCATGTGGTGAGCAGACGTGNACGACAGTAGGTATGNGCATGACCTGG
TCGTATGCTCGACGAGCGCTGATGTCACATAGTAGTGNTCACGTAGCGCG
ANTATGGATGTTGTAGTTTGATCTCGTCCTGNCGTATGAAGTGCATGNAC
TAGAGCTCTGATGACACTGCATANTATCGTAATGCTACCTCAACGTGTGA
NCTGNCGTAATACATCTNATAGTACATCTACTCTATGATATGACTTCACC
GCGAGCGGCCCNGCAGCAGACTGACGGTAGTACACTNGANTGAGTATGAC
TGATGGCTCCCCGCTGTNATGTATACGAGCTCCGAGNCTGTCGTCGCAGC
GTACGCAGACGCGCGCCGATGATTGTATAATCATAGTATTTNTANTTGCG
CCGCATNTCATGTACATACNTNNCTGCTGTCTGNTGCATCGACTATGATC
CGACGCTCGANCGCATCATTGANTCTGCGTGCNTNNCCCGCTATNACGAC
GCACGCATCTGACTGACGTACATNTCACATCTTGTACATANCNTTTGTAC
TAGNCCCCCACCAGATCATATACGAGTAGTAACTANTATGANCTANTACT
ATTNNACTATCTACAGCTGATGAGGTACTATGACTACTANAGGCNTNCTN
ATNTCANNTGCGCGTGATGNCTCCTGACGATATGTAGAGNCTCGACGAAG
TATAATCGCGGCGTGNTGTGCTGCACTGTANTNTGNCGTGNTAGNACGCA
CGCGGTAGTCGTACGGTGCTGAATGATGTGNTGTACAGTCGATGAGTTAC
TCAGTAGTATCGNCGTGTGGTGTCGCTGACATCGTGCTGCNTTGTANTGA
TAGTATTCTCTGATATAATAGTACTAGNTGATCGACTGTAGCTACACGCT
CTTACTNTTTAAGCACAGCCTGTCGCACCGACTCANCGACGTCTCATATG
CTGTGTGACTNANCGACGAACNGTCAACGATAGCATTACTANCATTCTNA
CTAGTAATACGAATGCATGATATGNANCGTATAGTCACAGTGTCACGCTG
TNAGTAGTCTTCCGATGATCATCATGNTACAGATGTACGTAGCGATCGAT
AGGNTAGATCGTGCGTATAGTGATCACATTTCNATCGCATCGCGATGCTG
ACGANTATATACTGCTGTTCAGCACGCGCGCGATCGATCGCTGTACTGAG
CAATCCGCTGCAGTACGTGN
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATGGGTTTTGGCTGGACGACACTGATAGTAT
GTTTTAAGGGCCATAATCGAGAAACCCAGTCAGAATTTCAGACAGCTCCC
TTTTCAGCCCTTCATCCCACACACGCTGTTAACTACTATTACCCAAACTG
CAGTACACACAAACCACGGGTTCTTGACCCACAAACTCTGAACTAAAATA
ACCCCTTCCTTCCTTCCTTCAGTTGCCTTTAGTCTGGTAGTTTGCTTCAC
AGTATTGAAAAAGGTAACTAATCCAGCGGGAAAATTCTTACTTAGAAAGT
ACAAAATTCTGAGTGTTGGGTAGCAGTTTTCTCTGAGGTTAAAAGTGTTC
ATCCGAGAGGGAAGCTCAGTAAGGCTCACAGGGTGCTCACAGGGTGGTAG
AACAGGGTGTTCGAAGAGAAGGTGAAACATTGCTGCCTCGGGGAAGGTTC
TGGTGCTCCGAAAGTGAACAACTCAAAATAGCTTGAGGAAGTTCCTGAAA
CTGACCGTATAGTCTAGGCCCCTCCCTAAGCATGTAGAAGCAGTAAAAAA
ATGACTGAGAGACTGACAGATATGCTGAGCTTCCAGCTGTGTGGGAGGAG
CCCAGACCGATTTGGCTGCCTGGAAAAAATAAAGATCCGTCCAGGCGGCT
AGCTTGGCAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_g12.g1 MSMg01no460_g12.g1 CHROMAT_FILE:
MSMg01no460_g12.g1 PHD_FILE: MSMg01no460_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:38 2005
         (484 letters)



>mm_chr1_79758885_79759767
          Length = 883

 Score =  758 bits (392), Expect = 0.0
 Identities = 456/490 (93%), Gaps = 24/490 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgggttttggctggacgacactgatagtatgttttaagggccataatcgagaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatgggttttggctggacgacactgatagtatgttttaagggccataatcgagaaacc 260

                                                                       
Query: 61  cagtcagaatttcagacagctcccttttcagcccttcatcccacacacgctgttaactac 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cagtcagaatttcacacagctcccttttcagcccttcatcccacacacgctgtta-ctac 319

                                                                       
Query: 121 tattacccaaactgcagtacacacaaaccacgggttcttgacccacaaactctgaactaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 tattacccaaactgcagtacacacaaaccacgggttcttgacccacaaaccctgaactaa 379

                                                                       
Query: 181 aataaccccttccttccttccttc----agttgcctttagtctggtagtttgcttcacag 236
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 380 aataaccccttccttccttccttccttcagttgcctttagtctggtagtttgcttcacag 439

                                                                       
Query: 237 tattgaaaaaggtaactaatccagcgggaaaattcttacttagaaagtacaaaattctga 296
            | |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 440 cagtgaaaaaggtaactaatccagcgggaaaattcttacttagaaagtacaaggttctga 499

                                                                       
Query: 297 gtgttgggtagcagttttctctgaggttaaaagtgttcatccgagagggaagctcagtaa 356
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 500 gtgttgggtagcagttttctctgaggttaaaagagttcatctgagagggaagctcagtaa 559

                                                                       
Query: 357 ggctcacag--ggtgctcacagggtggtagaacagggtgttcgaagagaaggtgaaacat 414
           |    ||||  |||||||||||||||             ||||||||||||||||||| |
Sbjct: 560 g----acagagggtgctcacagggtg-------------ttcgaagagaaggtgaaactt 602

                                                                       
Query: 415 tgctgcctcggggaaggttctggtgctccgaaagtgaacaactcaaaatagcttgaggaa 474
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgctgcctcggggaagcttctggtgctccgaaagtgaacaactcaaaatagcttgaggaa 662

                     
Query: 475 gttcctgaaa 484
           ||||||||||
Sbjct: 663 gttcctgaaa 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)