BAC Information

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BAC

Clone NameMSMg01-460I19
Chromosome1 (Build37)
Map Location 67,384,745 - 67,384,896
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460I19.T7 (MSMg01no460_i19.b1)MSMg01-460I19.TJ (MSMg01no460_i19.g1)
ACCAG545881AG545882
length724588
length of high quality
(start - end)
151 (61 - 211)44 (79 - 122)
definitionCHROMAT_FILE: MSMg01no460_i19.b1 PHD_FILE: MSMg01no460_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:49 2005CHROMAT_FILE: MSMg01no460_i19.g1 PHD_FILE: MSMg01no460_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAATTTGCGGCGCTAAACGATCACTTTCGAAGAGGACCGCGGAATTCTA
TTATCTGCAGATATTTTCTAATTATTTTGTCCCTTAATATAGTCTTGTGG
TCTTTGTGCTACTTAATACTACAGTACTAAAATAATCTCAGGTTTAACAC
TATATCCTGCAGTTCTGATTGAGTCTTCCTAGATCTTTTCAAGTAACATG
TTCCCACAGAGCTCCACATTCAAGACATGGTCTACCTGATGATGTAGTTT
GAGGGGGTGATGCTATGAAATAAAGAAGAAACCCCCCCCCTGGTTTTTTT
TAGTCTATGGAGTATCTACTCACTAGAACAATCCAAACCTCCCTCTCCCC
CCCTCTTTTCTCCTTCCCTTCTTTNTAGANATTTATAAATTAAATCTAAT
TACCCTTTTTATTTTTTTTCTTATTCTTTTTTCTTACCAATTTTGAGATG
GAGGCTTTTTTTTCCTCTCTCCCCTTTTCTCCCTTTTTTATTCATTTCTC
TTTTTCCTCTTCTTTTGCCACGATACACCACTATTTTAATTTATATCATT
CCTCTTCCCCTCTTTTACTTCTTATATTCTCTCCCCGTAATGTTGTCAAT
TTTTCCTATAATTCTATTATTTTTCCTTCTTTTATTAATTCTCTCTTATT
TTATCATTATCTTCCCCTTCTTGTATTTAATTTATTTTCTTTTCCACCGC
TTTTTTTCCGCATTAATTTTTTTG
CCCTCCTCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTCAGGATGACTGGGTCA
CCACCTCTTTTTGATTTGGGGGAGAATGCCGGCCTTTAGTTTTTTATTTT
GGAGAACATTTCACCCACCCTCCAAATGTGGTTTGGGGGGTCCCATAAGG
GGAACTTTCCTTTCCCCGGGGGGGGAAGCCCCCTAAACGAAAAATAAATT
TTCCCGGGGGGGTGAAGGGGAGATTTTGAAAAGTGGCTCCCCCCACGGAA
AATAAGGGGGGGAAAAGTGGGCTTTGTGGGCTTTTTTTCTAAACATGGGG
GGGGAAAAACAAAAGTCCCCCTCCCCCATAATTGTGGATATTTTTTTTTT
TTTTTTTTGGTTCCCCCCCCTTCCCTAGGGAAAAAAAAAAAAAATGGTGT
GCGTGCTCTCTCTCCTCACAAAAAATATTTTTCTGTGGGGGGGGGGCCCC
CCCCCCTCTGGGTGGTTGCTCCTCTTTTACTTTTTTTATATTTTTATCTC
CCTTTTTTTACACAAAGAGGAGGTTTCCCTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_i19.b1 MSMg01no460_i19.b1 CHROMAT_FILE:
MSMg01no460_i19.b1 PHD_FILE: MSMg01no460_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:49 2005
         (151 letters)



>mm_chr1_67384545_67385096
          Length = 552

 Score =  286 bits (148), Expect = 3e-82
 Identities = 151/152 (99%), Gaps = 1/152 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattttc-taattattttgtcccttaatatagtcttgtggtctttgtgctacttaatac 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atattttcataattattttgtcccttaatatagtcttgtggtctttgtgctacttaatac 293

                                                                       
Query: 60  tacagtactaaaataatctcaggtttaacactatatcctgcagttctgattgagtcttcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tacagtactaaaataatctcaggtttaacactatatcctgcagttctgattgagtcttcc 233

                                           
Query: 120 tagatcttttcaagtaacatgttcccacagag 151
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tagatcttttcaagtaacatgttcccacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 552
Length adjustment: 8
Effective length of query: 143
Effective length of database: 544
Effective search space:    77792
Effective search space used:    77792
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)