BAC Information

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BAC

Clone NameMSMg01-460M08
Chromosome1 (Build37)
Map Location 188,481,233 - 188,481,450
singlet/doubletsinglet
Overlap geneTgfb2
Upstream geneLOC677785, Lyplal1
Downstream geneRrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460M08.T7 (MSMg01no460_m08.b1)MSMg01-460M08.TJ (MSMg01no460_m08.g1)
ACCAG546049AG546050
length710722
length of high quality
(start - end)
219 (315 - 533)439 (74 - 512)
definitionCHROMAT_FILE: MSMg01no460_m08.b1 PHD_FILE: MSMg01no460_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:07 2005CHROMAT_FILE: MSMg01no460_m08.g1 PHD_FILE: MSMg01no460_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXAACCGAAAGAGGATCCGCGGAA
TTCTAGTTCTCGTCATTGTGGAAACAACTGAAAGCGAGGCTCCTGAGGGG
CCAGCATGTAATACCTTGGTTGTATACAGTCCTTTCCTTAAGTCTCCCTC
TCTGGAAACATTCACCCTTAAACCTGAGGCATGTACCACCCCTTATCTTG
TCTTAATAAACGTATGTACGGCGATAAATGTTGACTGGTCTTCAGATTCT
TTTCTGCAGTGTTGGCAAGGATCTGCTCTGTCTGAACAGAGATTCCTAAG
TGGGTATCATATTCTAGGAGCACAGGGCTGAGCTCTCTGTCTTCTCACTA
CCGCTAGCACTCAAAGAATGAGGAGAATAGTCTACATTTGCTATATTTCC
TAGGCTACTCTTGAGTACCTTAGATTTTGAGAATCACTGAAATAAAGGAC
AGGGGAAAAAAGCCACAAATAAACTCCAAAGCACAAAGGAACATCTAGGC
TTTTGATCAGACATTGCACATATCACATGAGTACATCAGACATTGCACAT
ATCACATGAGTACAAGGATCCCCCTGCCTTCCCAGATAAAAAACTCCAGC
ACAGGGAGAAAAATTCGGGGCCCTTGCAAAATTTGGTGTGAAGAAACCGT
GGAAGTCTCCCGGCTATTTCCTTTTTAAAGGGCTTCCATTGTTTTTGACC
TCCTGATCCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAAAAAAAAGTAAGGTTGTAAGACA
CTAAACAAAAATAGTAACCCCATCCCCAGTTACAAACAGGATGCCTATGT
CACACTCCCTTCCCTCAAGGCCCACGGGACATTATTAAAGAAAGAGAAAA
AGAGACTACCAGAGCCAGAGTTTATGGAGGACTGGAGCAAAACATGACAG
GACACAGCACCTGTGAACTCCAGCACAGAAGCATGCCCAAGACCTAAGCC
GGCAGCATTGGAGTGGAGGGGTAAGGGACTTACAAGCTTCTGTCCCTAGC
TGAGGAGTTACTGACCGTCGATAGCCTCCAGGGGAGGGAGAGAGAATTTT
CTTTAAAAGTATGGTTCCATGGCAGCCTGCTAAGCTCAGTGGATAACTAC
ATGAGGATCGAAAACTGGACTGAGTAGGTTTTTTTTTTTTTTTTTTAAGT
GAAGACTTGGAGTTGTAAAGGTGGTTGCCGATTATGGGGAGAATTGCGAG
AATAATAATGGGCCTCTGTACGTCCCTCTTTGTTTGTTCTCCAAGCCCAT
ATCACTCTTTCTTCCGAGGAGCTACCCCCCCTTGATCCCCCCCGGTTGCC
CCACTTGTAAGGATCTCGCCTCGTTCATTCTTGCTCCCTGTCTGACCTCT
TTTATTTATAACTTCTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_m08.b1 MSMg01no460_m08.b1 CHROMAT_FILE:
MSMg01no460_m08.b1 PHD_FILE: MSMg01no460_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:07 2005
         (219 letters)



>mm_chr1_188481033_188481650
          Length = 618

 Score =  377 bits (195), Expect = e-109
 Identities = 213/221 (96%), Gaps = 5/221 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggagcacagggctgagctctctgtcttctcactaccgctagcactcaaagaatgagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 201 taggagcacagggctgagctctctgtcttctcactaccgctagcactcaaagaat---ga 257

                                                                       
Query: 61  gaatagtctacatttgctatatttcctaggctactcttgagtaccttagattttgagaat 120
           ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||
Sbjct: 258 gaatagtctacatttgctacatttcctaggagactcttgagtaccttagattttgagaat 317

                                                                       
Query: 121 cactgaaataaaggacagggg--aaaaaagccacaaataaactccaaagcacaaaggaac 178
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 318 cactgaaataaaggacagggggaaaaaaagccacaaataaactccaaagcacaaaggaac 377

                                                    
Query: 179 atctaggcttttgatcagacattgcacatatcacatgagta 219
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atctaggcttttgatcagacattgcacatatcacatgagta 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 618
Length adjustment: 9
Effective length of query: 210
Effective length of database: 609
Effective search space:   127890
Effective search space used:   127890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)