XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCTGCCCGAGCAACTATGCCAAAGGTCCTGCGTGTTTTACTACTCTTT
ATGCTATGAATAGTCCACCAAAGCGGAGACTTATGTCCCATCTTTTCATC
CTTTCTTTAGCCAGTCCCACTGAGCAGTACTTTGTGCTAGTGACTATTTG
TCATTGATGTTGAGAAATATCTCATGGATCAGGTTTTGCCAACTGTCCAG
GTGAGAGACCATGAAAGAAGAGACCAGCTGACCCAGTCCTGATTACTTTG
CTTATTTTATCTTTTTGTAGCTGTCATTATCCAGACTTTGCTCCTGTGTT
CTACAGTGTCAATTTCTTAGAGAGATTGAGCAGGGCTGCCAAAGGCATTC
CTCTTTGTCAAATGTTTCGCTTATTATTGAGTTTATGCCCAGGGAAACAT
TTATCTTTTTTTGGAAGTATTGCTGCCATGCTTGCTCTGATGCCAGGTTC
AGTCCCAGGGATGTTTAAGGAGGTCTTGTTAAAGCAGAAAGGATGGATGC
TGAGGGAACGTGAATAATTAGCTTGAAGACATGTGATCAGTGTGTCAGCA
TGGTAACTTGTCACAAGGACTGAGAGTCATAGACCTTCACAGCTAGGATT
TGCCAGAGGTCCTTAGCTTGACAGCCCCATGTTTTTCTTACCCACACCTC
TGGTTGAC

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCATTATTTGGAGGGCAGAGGCCTCCT
GAGCCTTCAGCAAGGCCTGTGGCCATCTTCCTCATTCTGTTTATGGGTAG
GCATTCATGTTGGTGAGAGGTTATGGGTAAGATACACTCTCACAACAGAC
TCCCTGCTCCTCTGGCTCTCACAAATTCTCGACCTCTCTTGTGAAATATT
CCCTTGGCCTTAAGTATGGGAGTGTTTTGTAGATGTATCAGCTGAGACTG
GCTTTTTTAGCTTTGCATTTTGATTGGTTGTGGTTTTCTGCAGTGGTCTC
TGTCTCTGCTGCACAGGTCTGTTTCTGTTATGAGGGCTGAAGAATGCACA
TATCTGTAGGTGTAAAAACAAGTATTTAGCATGTCGTTAGGACTTATGCT
GGTTTAGTAAAGTGTCAGTAATAGGTTCTCCAAGGTTTCCAGTGTTGGCT
AGGTTCCCAGTACCAGGCATGATTTCACTCCTGTTGAGTGGGTCTTAAGT
CCAATTAGAGAGCTGGTGGCTACTGCCAAGGTATGTGGGCCACTACATCA
CCTTTAGCGTTATTCTGACTTGCTGATTGCCGTTGTTGCCGCTCAAAGGG
GGTATATTTGGGTTATATTGTTGGGTGTTTTAACCTTTGAATCATTTGCC

Query= MSMg01no460_o07.b1 MSMg01no460_o07.b1 CHROMAT_FILE:
MSMg01no460_o07.b1 PHD_FILE: MSMg01no460_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:17 2005
         (584 letters)



>mm_chr1_61588176_61589159
          Length = 984

 Score = 1015 bits (525), Expect = 0.0
 Identities = 567/585 (96%), Gaps = 8/585 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttctgcccgagcaactatgccaaaggtcctgcgtgttttactactctttatg 63
           |||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ggaattctttctggatgagtaactatgccaaaggtcctgcgtgttttactactctttatg 725

                                                                       
Query: 64  ctatgaatagtccaccaaagcggagacttatgtcccatcttttcatcctttctttagcca 123
           ||||||||||||| ||||||| ||||||||  ||||| ||||||||||||||||||||||
Sbjct: 724 ctatgaatagtccgccaaagcagagacttacatcccaccttttcatcctttctttagcca 665

                                                                       
Query: 124 gtcccactgagcagtactttgtgctagtgactatttgtcattgatgttgagaaatatctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtcccactgagcagtactttgtgctagtgactatttgtcattgatgttgagaaatatctc 605

                                                                       
Query: 184 atggatcaggttttgccaactgtccaggtgagagaccatgaaagaagagaccagctgacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atggatcaggttttgccaactgtccaggtgagagaccatgaaagaagagaccagctgacc 545

                                                                       
Query: 244 cagtcctgattactttgctta----ttttatctttttgtagctgtcattatccagacttt 299
           |||||||||||||||||||||        | |||||||||||||||||||||||||||||
Sbjct: 544 cagtcctgattactttgcttacaag----agctttttgtagctgtcattatccagacttt 489

                                                                       
Query: 300 gctcctgtgttctacagtgtcaatttcttagagagattgagcagggctgccaaaggcatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctcctgtgttctacagtgtcaatttcttagagagattgagcagggctgccaaaggcatt 429

                                                                       
Query: 360 cctctttgtcaaatgtttcgcttattattgagtttatgcccagggaaacatttatctttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctctttgtcaaatgtttcgcttattattgagtttatgcccagggaaacatttatctttt 369

                                                                       
Query: 420 tttggaagtattgctgccatgcttgctctgatgccaggttcagtcccagggatgtttaag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttggaagtattgctgccatgcttgctctgatgccaggttcagtcccagggatgtttaag 309

                                                                       
Query: 480 gaggtcttgttaaagcagaaaggatggatgctgagggaacgtgaataattagcttgaaga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaggtcttgttaaagcagaaaggatggatgctgagggaacgtgaataattagcttgaaga 249

                                                        
Query: 540 catgtgatcagtgtgtcagcatggtaacttgtcacaaggactgag 584
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catgtgatcagtgtgtcagcatggtaacttgtcacaaggactgag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)