BAC Information

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BAC

Clone NameMSMg01-460O13
Chromosome1 (Build37)
Map Location 99,016,509 - 99,016,825
singlet/doubletsinglet
Overlap geneSlco6c1
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
Downstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460O13.T7 (MSMg01no460_o13.b1)MSMg01-460O13.TJ (MSMg01no460_o13.g1)
ACCAG546155AG546156
length717728
length of high quality
(start - end)
317 (311 - 627)486 (68 - 553)
definitionCHROMAT_FILE: MSMg01no460_o13.b1 PHD_FILE: MSMg01no460_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:18 2005CHROMAT_FILE: MSMg01no460_o13.g1 PHD_FILE: MSMg01no460_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
ATTTACATCAACAGGGAATTAAGTACTGAACACATGAGACTTTAGAGAGG
TATTTTATAAACTAATCACAATAGTATAGCATAGAAACTCAAAGGTCTAA
AATAGACAATTGTTTAGTCAAAGTAGTAGTGTACATGTAATTTAAAGATT
GCTAAAGAAAGTACCAGGATATAAGACTCTGGAGACAAATGTCAGAACAA
CAGGATACAAAGTATTGGAAAATGGGTGGAATATGTATTGTGTATGTGTA
AATGGGTANATATATAAGAATATCTGTGTACATGTAATCCTGTGCAGCTA
AATAACCACACCATTTCATAATATGTGCATTTCTTTTTGTATTTCTGACC
ATTTTCTTTTACTGTGCTATTTCTATTTAGAGCAATATGAGGAATTGATT
CTATGACTATACTCAATCTAACAATGAGAAAAACATGTGCTGGTAGCAAT
AGAAAATTAACTGTACATTTAATTTTGAACTCAATTCAGTAAAATATATT
TTTATCTTTCAAAAGAGTTGTGCATGGAAGAAAATGAAAAGAGAAATATA
ACTTGTGGAAACTCAGTTCCGAACAGATCATAATGTATCTATTTCCACAT
CGCTGGGCAGTGTATCCATGGCATAGCAGGGATGCCAATTTATATCCTTG
GCATAACCTTCATTTTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGAAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCATAAAATTGGACATAGTACTACCAGAGGATCCTGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTTCCAACTTGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGTAA
AGAACCCAGATGCCCCTCAGCAGAGGAATGGATACAGAAAATGTGGTACA
TTTACACAATGGAGTACTACTCACCTATTANAAAGAATGAATTTATGAAA
TTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCTGGAGTGAGCTAAC
CCAATCACAAAAAACTCACATGATAGTACTCCCTGATAAGTGGATATTAT
CCCACAAACTTAAAATACCCCAGAAATAAGAAACCATTTGGTAAACACGG
GAAACTCTAGGAAAAAGGAAAACCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_o13.b1 MSMg01no460_o13.b1 CHROMAT_FILE:
MSMg01no460_o13.b1 PHD_FILE: MSMg01no460_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:18 2005
         (317 letters)



>mm_chr1_99016309_99017025
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatataagaatatctgtgtacatgtaatcctgtgcagctaaataaccacaccatttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tatataagaatatctgtgtacatgtaatcctgtgcagctaaataaccacaccatttcata 458

                                                                       
Query: 61  atatgtgcatttctttttgtatttctgaccattttcttttactgtgctatttctatttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atatgtgcatttctttttgtatttctgaccattttcttttactgtgctatttctatttag 398

                                                                       
Query: 121 agcaatatgaggaattgattctatgactatactcaatctaacaatgagaaaaacatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agcaatatgaggaattgattctatgactatactcaatctaacaatgagaaaaacatgtgc 338

                                                                       
Query: 181 tggtagcaatagaaaattaactgtacatttaattttgaactcaattcagtaaaatatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggtagcaatagaaaattaactgtacatttaattttgaactcaattcagtaaaatatatt 278

                                                                       
Query: 241 tttatctttcaaaagagttgtgcatggaagaaaatgaaaagagaaatataacttgtggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 277 tttatctttcaaaagagttgtgcatggaagaaaatgaaaagagaaatataatttgtggaa 218

                            
Query: 301 actcagttccgaacaga 317
           |||||||||||||||||
Sbjct: 217 actcagttccgaacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)