BAC Information

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BAC

Clone NameMSMg01-461F15
Chromosome1 (Build37)
Map Location 119,435,072 - 119,435,264
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F15.T7 (MSMg01no461_f15.b1)MSMg01-461F15.TJ (MSMg01no461_f15.g1)
ACCAG546495AG546496
length780782
length of high quality
(start - end)
134 (324 - 457)196 (215 - 410)
definitionCHROMAT_FILE: MSMg01no461_f15.b1 PHD_FILE: MSMg01no461_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:55 2005CHROMAT_FILE: MSMg01no461_f15.g1 PHD_FILE: MSMg01no461_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGAAT
TCTCACCTGTTGCAACCAAATGGGAGAGAAGCACCTGAGAAAATGTTCAA
CATCCTTAATCATCAGGGACATGCCAATCATAACAACACTGAGATTACAC
TTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCGAGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGGGGAGACACTCCTCCATTGATGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGCTTCCTCAAAAA
ATTGGACATAGTACTATTTGTTGATCCCGCAATACCACTCCTGGGCATAT
ATCCAGAAGATGCCCCAACCAGTAAGAAGAACACATGCTCCACTATGTTC
ATAGCAGCCTTATTCATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACCATGGATT
ACTACTCAGTTATTAAAAAATGAATTTATGAAATTCCCATCCCAATGGAA
TGGACCTGGATTGGACCTTCCTCGAGTGAGGTATCTCCTACCCCCCAGGT
ATCTCCCCCATAATTGTTTCCTCTGTTAGCGGGTTAAAACCCCCAATTTT
TTTTTTTCCCTCTGATATAAATATACCTCCTGCCGTATCCCTCTACAATT
CTCTAATAATTCCTCACCCGATTTCCTTTGTTCCTTTTTCTTTCCTCCCA
TATTCTTTGGCTTCCACACATCTCTCTTTT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGGGTAGCTGAGGATCGGCTTTGTATT
TCTGATCCCTCTGACTGTTGCAAATGTAAGTATACACCACTGCTGTTAAA
TAGACTGTGCTTATTCATTATGCCTAAATTTTCTGTATATGAGGCAGGCA
TATCATTTGACAGACTTCCCACTGATTTATTATAAATTTGATTATTCTCA
AAGATGCATGTTTAACGCTAGTTGTAATGGGTCTGCATGGGCTACTTTGC
TCTTAGCACAAGGAGTTGTCTCCAGTTTCACTTCCTGCAGGTTCTCTTTG
TCTGATTTGTTGAGGTTTCCCTGGAATCAGCACCAAGTAGGGACCAATGT
TGAATATCAATGAGTCCCACCAGCATTAAGCCTTAGGAATACTCATATTC
ACATAAACAATTTTATGACAAACATGCTTAAGCTAAAAATATCTCTTAAA
GTCCTGTATCTCCCTCTTCCAGCACTGTTTCAGTCCACTCTCTACAAATA
TACTTTACTCGTCCCCTAATATCCTATCCCCTTGTCTAGTTTGGTTATAA
ACCCCCTCCTTTCTCTCCTTTTTTTATCCTCCTACATATCCATCCTCTTC
CCCTATTTTCTTTACTTTTCCCCCCGCTCTTTTTTTTTTATCCTCTCCCT
CCCTTTTTATTCCATTTCCATCTTTTCTCTCCATTTTTCTCCCGCTTTTT
TCCCTTCTCTTCCACACCTTCTTATTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f15.g1 MSMg01no461_f15.g1 CHROMAT_FILE:
MSMg01no461_f15.g1 PHD_FILE: MSMg01no461_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:55 2005
         (196 letters)



>mm_chr1_119434869_119435464
          Length = 596

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   cccactgatttattataaatttgattattctcaaagatgcatgtttaacgctagttgtaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cccactgatttattataaatttgattattctcaaagatgcatgtttaacgctagttgtaa 263

                                                                       
Query: 64  tgggtctgcatgggctactttgctcttagcacaaggagttgtctccagtttcacttcctg 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 tgggtctgcatgggctactttgctcttagcacaaggaattgtctccagtttcacttcctg 323

                                                                       
Query: 124 caggttctctttgtctgatttgttgaggtttccctggaatcagcaccaagtagggaccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggttctctttgtctgatttgttgaggtttccctggaatcagcaccaagtagggaccaa 383

                        
Query: 184 tgttgaatatcaa 196
           |||||||||||||
Sbjct: 384 tgttgaatatcaa 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)