AGTCCTCATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCCTCTATTCTACAATTTACTTAGGAATTTTAAAGATTGGCATATATT
CTTAGCTTATAAGGTACCATAATTCTGTATCAGACTTAAAAGAAAAATGA
AAGAAATATATTCCCTGCTACTTTCCCCAAAATATTTCAGAGAAACATTG
TTCCCAAAGCATGAGTTTTGAGGTCAAATAATTTTGGAAAATGTTGACTG
TCATCAGGACTGCACCTGCCTTCATATTTTTGTGCTTCCAGCTGCAAAAG
GGAGAAGTAATAAAGTTCCCATTTACAGAAACGGGAGCAGCATGACCCAC
GGTGCTCTGGTGCAGAGCATAATTTTACACTAAAAAAAGTAATGGAATAC
TTAAATATGACGAAAATGATTAACGTAAGATATTTTTATTGCTATCCTAG
GTTTTTTGTTATTCCAGATGATTTTACAAATTGCCCTTTCTAATTCGTTG
AAGAATTGAGTTGGAATTTTGATGGGGATTGCATTAAATCTGTAGATTGC
TTTTGGCACAATAGCCATTTTCACTATATTGATCATGCTCATCCCATGAG
CATGGGAGATCTTTCCATCTTCTGAGAACTTCTTTAATTTCTTTCCTCCA
TGATTTGAAGTTCCTATCAAAAAAATCTTTCCTTTCCTCAAATAAGAGCC
ATGGCCACGTTATTTTTTATTTATTTTTTACCTATGGCGTATCCGGTCTA
CTTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACCTTAAATGACAGTTGTACCCTTTCAT
GGACTGCTCGGCTGTATTGAATAAAAGGAAGTTACCTGATAAACAGTACT
TATTTCTTTAGGCTTCCTGAATGAGGATATAATGTAAAACAATGTTTCAT
GCTCCAACAGCCATTCTTTCTACATCATGATGGACCACAAATTGAAACTG
TGAGCCAGAATACATCCTTAATGCCTTACACTGTTCATGCTAAGTCACTC
ACACACACACACACACACACACACACACACACTCACACACACACACACAG
ACACACTCAGATACACACAGACACACCCACACAGACACTCAGATACACAC
AGACACACAAAAACACAGACATAGACACACACATCTATCTATGTATCTAT
CTATCTATGTATCTATCTATCTATGTATCTATCTATCTATGTATCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTAATTACCCATTCTGTTTTATCATACA
TAGGGAAGTTAGTTTTATCTACCACTACACAAAATGCTATATTTATAGGA
TAATATGTCCCCAACATGAGCCACTTATGACGCCAGTTTAAGGAAATGAC
TTTCCATGACCTCCATTTGTGAGGAATTTTCCCCCCCAAAATTTAAGTTT
ATTTAAACGTTAGCCCTCGTTACTTTTTTTTTTATCACTCCCTCTTGGTC
CCCAACT

Query= MSMg01no461_f19.b1 MSMg01no461_f19.b1 CHROMAT_FILE:
MSMg01no461_f19.b1 PHD_FILE: MSMg01no461_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:56 2005
         (490 letters)



>mm_chr1_28955472_28956361
          Length = 890

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctctattctacaatttacttaggaattttaaagattggcatatattcttag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctctattttacaatttacttaggaattttaaagattggcatatattcttag 264

                                                                       
Query: 65  cttataaggtaccataattctgtatcagacttaaaagaaaaatgaaagaaatatattccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttataaggtaccataattctgtatcagacttaaaagaaaaatgaaagaaatatattccc 324

                                                                       
Query: 125 tgctactttccccaaaatatttcagagaaacattgttcccaaagcatgagttttgaggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctactttccccaaaatatttcagagaaacattgttcccaaagcatgagttttgaggtc 384

                                                                       
Query: 185 aaataattttggaaaatgttgactgtcatcaggactgcacctgccttcatatttttgtgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaataattttggaaaatgttgactgtcatcaggactgcacctgccttcatatttttgtgc 444

                                                                       
Query: 245 ttccagctgcaaaagggagaagtaataaagttcccatttacagaaacgggagcagcatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccagctgcaaaagggagaagtaataaagttcccatttacagaaacgggagcagcatga 504

                                                                       
Query: 305 cccacggtgctctggtgcagagcataattttacactaaaaaaagtaatggaatacttaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccacggtgctctggtgcagagcataattttacactaaaaaaagtaatggaatacttaaa 564

                                                                       
Query: 365 tatgacgaaaatgattaacgtaagatatttttattgctatcctaggttttttgttattcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgacgaaaatgattaacgtaagatatttttattgctatcctaggttttttgttattcc 624

                                                                       
Query: 425 agatgattttacaaattgccctttctaattcgttgaagaattgagttggaattttgatgg 484
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 625 agatgattttacaaattgccctttctaattcattgaagaattgatttggaattttgatgg 684

                 
Query: 485 ggattg 490
           ||||||
Sbjct: 685 ggattg 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)