BAC Information

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BAC

Clone NameMSMg01-462F04
Chromosome1 (Build37)
Map Location 7,816,216 - 7,816,707
singlet/doubletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462F04.T7 (MSMg01no462_f04.b1)MSMg01-462F04.TJ (MSMg01no462_f04.g1)
ACCAG547237AG547238
length731754
length of high quality
(start - end)
509 (54 - 562)492 (75 - 566)
definitionCHROMAT_FILE: MSMg01no462_f04.b1 PHD_FILE: MSMg01no462_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:18 2005CHROMAT_FILE: MSMg01no462_f04.g1 PHD_FILE: MSMg01no462_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCTTCTCTGAGCCCCATCTTTTAAGGGGGCTA
TTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGAATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTATTGAGGGTGTCTTTTGCCTTGCAGAAGCTTTG
CAGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTTAAAGCACAAGCCA
TTGCTGTTCTATTCAGGAATTTTTTCCATGTGCCAATATCTTCGAGACTT
TTCCCCACTTTCTCCTCTATAATTTTCAGTGTCTCTGGTTTTATGTGGAG
TTCCTCGATCCACTTAGATTTGACCTTAGTACAAGGAGAGAGGAATGGGT
TGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTG
TTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAG
GATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCCAT
TCCATTGGTCTACTTGTCCGTCACTATACCAGTACCATGCAGTTTTTATC
ACTATTGCTCTGTTATTAAGTTTTTAGTCCTCGCTTGGTGATTCCCCCCC
GAAGTACTTTCTATTCTTTGGAGAATATCTT
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGGATCGAATGGAATGGTAGAGAA
TGATTTTAACCTAATGTTCTTTACAGTTTGCCTTAACAGTTTGACCAAGT
GCTCAAACAGCAAGGAGAAAACCAAGGGAACTTCTTTCTGTCTTGTGGAT
ATAACAATATGAATGGAAAAATTCCTACTTTAAGTCCTCAGAGGGTCAAG
ATTCCTTGATGAGAGATTGAAGGTGTCACTATCCGATGATCACTAAGAAC
TTTAGTTGCCAGCTAAGAGCAGTTCTTTGGACAGCAAGTCTTCAGTTCCC
ATTGCAGTAGCAGAGGCATGTCTCCTGTTTCTGGTAGGTGTGGGAGTACG
AGGTCTCTAGTGACTGAGGCAGGAATCAGTTCCTCTGCTTGGAGTTACTG
ATAGATTTCTGAAAGGCTAGCTGTGATCAGAAGCTTTAGATGTGTGAAGT
CAGACTCTATCTCCAGAGAGCCCCATCTCAGGACAGTAGCTTCAAGCACA
GGGAAGATTATACAATTCCCTACCTGGTAACCATTTTTCTCCTAAACTAC
CTTATTTTCTTCTGTCTCACAGCTGCAAAATATTAAAATTTATGGGGGTT
TTAACAGGGCCATGATTATATTTGACCACTAAAATATAAAGAAAGAATGT
GGTCTTGTATTCAAAATCTGGTCCAGAAATAACTCTGACATAGCATGTTG
AATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_f04.g1 MSMg01no462_f04.g1 CHROMAT_FILE:
MSMg01no462_f04.g1 PHD_FILE: MSMg01no462_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:18 2005
         (492 letters)



>mm_chr1_7816016_7816907
          Length = 892

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggatcgaatggaatggtagagaatgattttaacctaatgttctttacagtttgcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aatggatcgaatggaatggtagagaatgattttaacctaatgttctttacagtttgcctt 633

                                                                       
Query: 61  aacagtttgaccaagtgctcaaacagcaaggagaaaaccaagggaacttctttctgtctt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aacagtttgaccaagtggtcaaacagcaaggagaaaaccaagggaacttctttctgtctt 573

                                                                       
Query: 121 gtggatataacaatatgaatggaaaaattcctactttaagtcctcagagggtcaagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtggatataacaatatgaatggaaaaattcctactttaagtcctcagagggtcaagattc 513

                                                                       
Query: 181 cttgatgagagattgaaggtgtcactatccgatgatcactaagaactttagttgccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttgatgagagattgaaggtgtcactatccgatgatcactaagaactttagttgccagct 453

                                                                       
Query: 241 aagagcagttctttggacagcaagtcttcagttcccattgcagtagcagaggcatgtctc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagagtagttctttggacagcaagtcttcagttcccattgcagtagcagaggcatgtctc 393

                                                                       
Query: 301 ctgtttctggtaggtgtgggagtacgaggtctctagtgactgaggcaggaatcagttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgtttctggtaggtgtgggagtacgaggtctctagtgactgaggcaggaatcagttcct 333

                                                                       
Query: 361 ctgcttggagttactgatagatttctgaaaggctagctgtgatcagaagctttagatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgcttggagttactgatagatttctgaaaggctagctgtgatcagaagctttagatgtg 273

                                                                       
Query: 421 tgaagtcagactctatctccagagagccccatctcaggacagtagcttcaagcacaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 272 tgaagtcagactctatctccagagagccccatctcaggacagtagcttcaagcacagggt 213

                       
Query: 481 agattatacaat 492
           ||||||||||||
Sbjct: 212 agattatacaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)