Query= MSMg01no462_i01.b1 MSMg01no462_i01.b1 CHROMAT_FILE:
MSMg01no462_i01.b1 PHD_FILE: MSMg01no462_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:32 2005
(572 letters)
>mm_chr1_24223060_24224030
Length = 971
Score = 1075 bits (556), Expect = 0.0
Identities = 568/572 (99%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 1 gagaactcaccacacacacaggagtgaataagtcaaagtatgaggagtagcgtgggtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gagaactcaccacacacacaggagtgaataagtcaaagtatgaggagtagcgtgggtttc 712
Query: 61 agcacctctttcagtagtggaatgttgctagtcccatggctgagggtttttcatgaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agcacctctttcagtagtggaatgttgctagtcccatggctgagggtttttcatgaacca 652
Query: 121 cctgataaagggtgaacctggatgctttctggggtactgtgagtgggtgctctgtgagca 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cctgataaagggtgaacctagatgctttctggggtactgtgagtgggtgctctgtgagca 592
Query: 181 gtaagctatgtcagacacctgtcaactttcaaaattggcttatcattaaaggtgctttag 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtaagctatgtcagacatctgtcaactttcaaaattggcttatcattaaaggtgctttag 532
Query: 241 agtggttatagtgttcatacttcacacttggaaaaaatgacacagttccaggaccagcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agtggttatagtgttcatacttcacacttggaaaaaatgacacagttccaggaccagcct 472
Query: 301 tcctttatctaattcagtcacaaattctctgtaggtcaatcagaaatggtctgaaattcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcctttatctaattcagtcacaaattctctgtaggtcaatcagaaatggtctgaaattcc 412
Query: 361 caagtacagtatgagccagcctagattaacaacttcaagcgaaatgtggtcatattggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caagtacagtatgagccagcctagattaacaacttcaagcgaaatgtggtcatattggat 352
Query: 421 taagctgccctttcttatccagctcatttgatggcgctgtaagtaattcctgtgcacacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 taagctgccctttcttatccagctcatttgatggcgctgtaagtaattcctgtgcacacg 292
Query: 481 ataaaataataaaaagcaccagtggtacaggaactcaaggaataagcactactaactgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ataaaataataaaaagcaccagtggtacaggaactcaaggaataagcactactaactgta 232
Query: 541 caaatatacagtaggaacttttatttttataa 572
|||||||||| |||||||||| ||||||||||
Sbjct: 231 caaatatacaataggaacttt-atttttataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space: 540082
Effective search space used: 540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_i01.g1 MSMg01no462_i01.g1 CHROMAT_FILE:
MSMg01no462_i01.g1 PHD_FILE: MSMg01no462_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:32 2005
(523 letters)
>mm_chr1_23994455_23995377
Length = 923
Score = 982 bits (508), Expect = 0.0
Identities = 520/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 1 actctgaagtaataggtagtaggactccatttattttaactcagaatggcatgagccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 actctgaagtaataggtagtaggactccatttattttaactcagaatggcatgagccttt 259
Query: 61 tcagaatggcattttt-cagagggaattttgtatatacatacacacaagtacacacacac 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcagaatggcattttttcagagggaattttgtatatacatacacacaagtacacacacac 319
Query: 120 acacagagactcaggttagaatgtggtggatctaggctaggtagaacacagcacttaaaa 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acacacagactcaggttagaatgtggtggatctaggctaggtagaacacagcacttaaaa 379
Query: 180 gctaacccgaatatttatctagagacaaggtcaaggctgcagtgatagcaacttgaatta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctaacccgaatatttatctagagacaaggtcaaggctgcagtgatagcaacttgaatta 439
Query: 240 gttttcatttttgtatgggaaattaacatcacacagcaagataaattaatgtttccacaa 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttttcatttttgcatgggaaattaacatcacacagcaagataaattaatgtttccacaa 499
Query: 300 gcaaaatggaaccaagctgctcttccaggcctcacctggctgaaatcaaagtgttggatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcaaaatggaaccaagctgctcttccaggcctcacctggctgaaatcaaagtgttggatg 559
Query: 360 ggctgtgaccttagccgaggcttagaatcctttacaaccttaaagaggttggcagcgaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggctgtgaccttagccgaggcttagaatcctttacaaccttaaagaggttggcagcgaca 619
Query: 420 tcaggggcggagggaagtacatctccagcttttcgttggcagctccccgaggagttcctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaggggcggagggaagtacatctccagcttttcgttggcagctccccgaggagttcctg 679
Query: 480 tcatcttttaagcgtctgaacccagagaaatcaagattaatcac 523
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 680 tcatcttttaggcgtctgaacccagagaaatcaagattaatcac 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
