Query= MSMg01no462_j14.b1 MSMg01no462_j14.b1 CHROMAT_FILE:
MSMg01no462_j14.b1 PHD_FILE: MSMg01no462_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:40 2005
(517 letters)
>mm_chr1_194845933_194846849
Length = 917
Score = 978 bits (506), Expect = 0.0
Identities = 512/514 (99%)
Strand = Plus / Plus
Query: 4 ggaattccaatctccttctcgctagtttttgatcaaggtatagaacttttgcttcttcac 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaatctcctcctggctagtttttgatcaaggtatagaacttttgcttcttcac 263
Query: 64 caagatgtatgtctgtctgttaccatgcttcttgccatgatggcaaggaactggactgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagatgtatgtctgtctgttaccatgcttcttgccatgatggcaaggaactggactgct 323
Query: 124 gaaagtctaagccagacccaattaaatgtttgcttttataagagttgcattggttgtggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaagtctaagccagacccaattaaatgtttgcttttataagagttgcattggttgtggt 383
Query: 184 atcacttcacagcaatgaaactgaaagacagagatgctctgataactctttggttattac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcacttcacagcaatgaaactgaaagacagagatgctctgataactctttggttattac 443
Query: 244 atacactatatcgtgcttatgatcagcccatataatgctcttcaatgtactaaatatctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacactatatcgtgcttatgatcagcccatataatgctcttcaatgtactaaatatctt 503
Query: 304 gaccatagattctgtatatcttatagataaataaaatattaatatttgtacttttctcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaccatagattctgtatatcttatagataaataaaatattaatatttgtacttttctcca 563
Query: 364 taggtaagtaattttaaaatgtaatatgggcaatgtgtttatttagatatggcagatatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taggtaagtaattttaaaatgtaatatgggcaatgtgtttatttagatatggcagatatt 623
Query: 424 ttcttctactgggctgccttgtctggcttcagtgcaagaggaagcacttagcctcccaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcttctactgggctgccttgtctggcttcagtgcaagaggaagcacttagcctcccaga 683
Query: 484 gacatgacgttccaaggggtccaccaccctctca 517
||||||||||||||||||||||||||||||||||
Sbjct: 684 gacatgacgttccaaggggtccaccaccctctca 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_j14.g1 MSMg01no462_j14.g1 CHROMAT_FILE:
MSMg01no462_j14.g1 PHD_FILE: MSMg01no462_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:40 2005
(579 letters)
>mm_chr1_194886692_194887670
Length = 979
Score = 1067 bits (552), Expect = 0.0
Identities = 574/582 (98%), Gaps = 3/582 (0%)
Strand = Plus / Minus
Query: 1 caaatatacatgttcagcaagaattttatctaagaaaccatctctccagctccaaatgaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 caaatatatatgttcagcaagaattttatctaagaaaccatctctccagctccaaatgaa 693
Query: 61 attaattttttttatttaagtgatttattagaggtgtgtagaaatacaatttttttgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 attaattttttttatttaagtgatttattagaggtgtgtagaaatacaatttttttgtgt 633
Query: 121 tgatcttatattcagtaaccttgaactatttacagttcttgtatt--tgtgtgtgtgtgt 178
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 632 tgatcttatattcagtaaccttgaactatttacagttcttgtatttgtgtgtgtgtgtgt 573
Query: 179 gtattccttaagactttaccaaattctctgtaatgaagttttgcttctttatttccaggt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtattccttaagactttaccaaattctctgtaatgaagttttgcttctttatttccaggt 513
Query: 239 tgtggaagtttccttttattcctgctgcttgctgagtttttaaaatataaaagcactttt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgtggaagtttccttttattcctgctgcttgctgagtttttaaaatataaaagcactttt 453
Query: 299 gacttggctgatcacctttgcaggactgctatcatttctgtatatgtctaggttgatcat 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 452 gacttggctgatcacctttgcaggactgctatcatttctgtatacgtctaggttgatcat 393
Query: 359 ctacattcatgctgatctatatttctctactagtgttcttgggtggttttaatatcaaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctacattcatgctgatctatatttctctactagtgttcttgggtggttttaatatcaaga 333
Query: 419 taatattattggcatcatagaatgaactggatattatcccttctactttttggaagtgtt 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 332 taatattattggcatcatagaatgaactggaaattatcccttctactttttggaagtgtt 273
Query: 479 tatgaagactggatcttacttcagctcttagtgtctcattaaagattgctcacataggct 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 272 tatgaagactggatcttacttcagctcttagtgtctcattaaagatcgctcacataggct 213
Query: 539 tttctttgcaagtagattttttttt-ctttcagttttttgag 579
||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 212 tttctttgcaagtaggttttttttttctttcagttttttgag 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
