BAC Information

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BAC

Clone NameMSMg01-462P09
Chromosome1 (Build37)
Map Location 186,960,789 - 186,961,060
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P09.T7 (MSMg01no462_p09.b1)MSMg01-462P09.TJ (MSMg01no462_p09.g1)
ACCAG547725AG547726
length775854
length of high quality
(start - end)
129 (77 - 205)274 (74 - 347)
definitionCHROMAT_FILE: MSMg01no462_p09.b1 PHD_FILE: MSMg01no462_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:09 2005CHROMAT_FILE: MSMg01no462_p09.g1 PHD_FILE: MSMg01no462_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCCTCTCTCATGCTGGGATTAAAGTCATGTCACCACAGCTAT
CCAGTGTGTATTTGTAATCAATGAACCATCCTGCAGTTCCTAGCACAGGT
CTTTAGGTAGGGAACTAAGACAGTTGTCTTAGGGTTTTAGATGTGAACAG
ACACCAGGACCAAGGCAACTCTTATAATGGAAACCATTTCACTGGGGCTG
GCTCACAGGTTCAGAGGTTCAGTCCACTATCATCATGGTAGGAACATGGC
AGCATACAGGAAGGCATGTTTTTATGAGGAGCTGAGAGTTCTATGTCTTC
ACCTGAAGGCTGCTAATAGAATACTGACTTCCAGGCAGCTAGGATGAGGA
TCTTAAAGCTAACACCCAGAGTGACACGCCTACTCTTACATGGCCACATC
TCTCTAACAGTGCCACTCCCTGGGCCGAGTATATACAAACCATCACAGGA
ACGAATAACAGACTGCCCAGAAGTTAGCTCCTTGACTAATTTGTCCAGCT
CTTGTCTCCATTAACACTCTCACCGCCAACTATCTTTATTACACTCTTTC
TTATTTGCTTTACCTGTATGTCCCTCGAATTGTATGTACATGTTTTCCTT
TGGTTTGTTTTACAGTCCTTTTTTAGTGGTGGGTTTCCACTTCCTTTTCT
TATCCCATTTATGGTTTTCATTATTATTTCATGCCCTCCTCCTTTTGGTG
TAGCCCCTCGCATTTTCTATTCGCG
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTAGTCCATGATCTTTCCATCAAA
AGAGAAGAAAAGTTGGGGGAGGAGGAAAAAAAATTCTATTTCTCATTCTG
GGTAGAAGGATGGCTTGTCATTTGGGAAAGCACTAAGGGTGAGAAGGGAG
GAAAGGGTTAAAATGAAACAGAAATTCTGGCCCTCACAAGCTGTAGGCCA
TCCCAGAAGGGACCCTCGAAGCCTGGAAAGGTGAGTTCACAGGCCCAGTG
TCTGTGTAGTGGTGGTGTTTAAAAATTTGTACAGTTAACAAGGGAGGTGG
AGTACAGAGAGTAGTTAATGAGTGGTTCTTCCTCTTCATTTAATAAATTT
TTTCTCTTTTTTTTCCCCCCTTTTTTTTTTTCTCCCGTTCTATTAATTTT
GCATTCCCTATTATTTTCTTTTTCTTCTTCTTCTTTCCATTTTTTTTTCC
TTCTCTATTCTCTTCCTATTATTTTTATTTTTCTTCTCTCTCTTTCAATC
CTTATTTCTTCCTGCTCCCTTATCCTTTTTTCTTCTCTTCCTTTTACCCT
TTGCTTTATTATCCTAATTTTTCTTCCTTTCTTTATTCTATACCCTTTCT
CCACTTTTTATTTTCTCTTTTTTCCTTTTCCTCCTCCTATTCTTCATTAG
CCCCTCTCTACCTTAATTTCTCCTTCTTCTCCTCTCCTTACCCGCCTCCT
TTCCTCACCTCTTCTCTCTATTCATCCCTATCCTTTTCTACTTTCATGGC
TCTTTTTTCGTCATATCTCTTCTCAACATAACTCCTCTTACACATTTCCT
TTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p09.g1 MSMg01no462_p09.g1 CHROMAT_FILE:
MSMg01no462_p09.g1 PHD_FILE: MSMg01no462_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:09 2005
         (274 letters)



>mm_chr1_186960589_186961260
          Length = 672

 Score =  487 bits (252), Expect = e-142
 Identities = 268/274 (97%), Gaps = 2/274 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttagtccatgatctttccatcaaaagagaagaaaagttgggggaggaggaaaaaaaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 472 cacttattccatgatctttccatcaaaagagaagaaaagttgggggaggagg--aaaaaa 415

                                                                       
Query: 61  ttctatttctcattctgggtagaaggatggcttgtcatttgggaaagcactaagggtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttctatttctcattctgggtagaaggatggcttgtcatttgggaaagcactaagggtgag 355

                                                                       
Query: 121 aagggaggaaagggttaaaatgaaacagaaattctggccctcacaagctgtaggccatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagggaggaaagggttaaaatgaaacagaaattctggccctcacaagctgtaggccatcc 295

                                                                       
Query: 181 cagaagggaccctcgaagcctggaaaggtgagttcacaggcccagtgtctgtgtagtggt 240
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 294 cagaaggaaccctcgaagcctggaaaggtgagttcataggcccagtgtctgtgtagtggt 235

                                             
Query: 241 ggtgtttaaaaatttgtacagttaacaagggagg 274
           |||| |||||||||||||||||||||||||||||
Sbjct: 234 ggtggttaaaaatttgtacagttaacaagggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 672
Length adjustment: 9
Effective length of query: 265
Effective length of database: 663
Effective search space:   175695
Effective search space used:   175695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)