NNAAAATTAATCCTCGTGTCGCTATACGACTCACTATTTCGAGAGGATGC
GCGGAATTCTGTATATTCCGGGAGATAAGTGCAAGATTTGACAAACTGAT
AGCATCAGACTAAAAGGACGTCTGTATAGCCAATCAAATAATTCACAGAG
TGGAGAGGAGGCCCACAAAAGGGAAGAAAAGTTTCTCTAAGTATTCATTT
GTCTGCGATTAATGCCTAGAATACATAAAGAACTCAACAATTAGATAATA
AAAAGAGCAAATAAGCCAATCAATAAATGGTCAATGGCTATAAACAGACC
TTTTTAAATGAAAATGCACAAATGTCCAATAAATACAAGAGAAAGTATAC
TTAGCCCTCAGAAATATACAAATTAAATTACGCTGAAATTGAATATGGGA
TCCGATGCCTGTGTGGTGGTTGGAAGTTACAACAGTAGGATTTCCGTGAG
TTTAAGGTCTTTTAAAGCTATATAGGAAGACTCTGTCGCAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAA
GGTAGNATGTATTTATCTANTTTTCTTTTTTATTTATTTCTATCATTTTT
TTTTCTTATACTCTAACTTGATTCTCCTAGTTTTTTTTTATATACTATTT
TCTCCTGCCTCTTTCCGTTTCTATCCTCTTCTTTTATTCCTCTCCTCTTA
TCTTTCCCCN

TTTTTCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTCAATCTGCATCTGCA
CTAAGGACTGGATTATTCAAGTGCAGAGAACACCACGGAAAGAGGAAGTT
GCATTTTTCAGGCTCAGCCATGTGCTCTTTAAAATGCTTGCTTCATGGCA
GTCTAAGCTTGCACTGACAGTGTCTGGTCTGCCTGAAACACCCCAATAGA
ACTGTAGAAAGCACAGAGTTCGGCAGCCTCTGCTAGACCTTTGGGAATCT
TCTGGTCTGCACTGGTCTGACTCAAAACAGCAGCATTAATGCTGCAGGAC
TACTGTCTGCATGACTCTTCTATTCAGCAAATGGAATATTCCAGGAAACA
CTAAAGTTATAGAAATATACAATCCTTCAGGCATAGGGAAAAAAAATTAA
ACGTACCTTTGTAAGATGTGGCTTTCTCTAAACTACTTGGCTTGTTTTCC
CTGCCTGTAAGCAGTAAGTGCTAAAAAGACCAAGGGGTTTTTGTGTTACT
GTTATCCCTAGTTTAGTTATACACTAGAAGCTCAGTGAGAAAAAGTCACA
GGACTTGCCCAGGAACACACAGTAATGAGTGAAGAGATCAGGTTGCACAG
TCTGTCAATCCCCTGCCACACACACTTCATAAACATATTTCATTCATGTG
CCACAGGACAACATTTCCTTGAATGAGAGAACAGCTCCTACCACAAAGAT
CC

Query= MSMg01no462_p19.g1 MSMg01no462_p19.g1 CHROMAT_FILE:
MSMg01no462_p19.g1 PHD_FILE: MSMg01no462_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:11 2005
         (527 letters)



>mm_chr1_41210937_41211864
          Length = 928

 Score =  990 bits (512), Expect = 0.0
 Identities = 524/528 (99%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttttcaatctgcatctgcactaaggactggattattcaagtgcagagaacaccacgga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttttcaatctgcatcggcactaaggactggattattcaagtgcagagaacaccacgga 260

                                                                       
Query: 61  aagaggaagttgcatttttcaggctcagccatgtgctctttaaaatgcttgcttcatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaggaagttgcatttttcaggctcagccatgtgctctttaaaatgcttgcttcatggc 320

                                                                       
Query: 121 agtctaagcttgcactgacagtgtctggtctgcctgaaacaccccaatagaactgtagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctaagcttgcactgacagtgtctggtctgcctgaaacaccccaatagaactgtagaa 380

                                                                       
Query: 181 agcacagagttcggcagcctctgctagacctttgggaatcttctggtctgcactggtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacagagttcggcagcctctgctagacctttgggaatcttctggtctgcactggtctg 440

                                                                       
Query: 241 actcaaaacagcagcattaatgctgcaggactactgtctgcatgactcttctattcagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcaaaacagcagcattaatgctgcaggactactgtctgcatgactcttctattcagca 500

                                                                       
Query: 301 aatggaatattccaggaaacactaaagttatagaaatatacaatccttcaggcataggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 aatggaatattccaggaaacactaaagttatagaaatatacaatccttcaggcgtaggga 560

                                                                       
Query: 361 aaaaaaa-ttaaacgtacctttgtaagatgtggctttctctaaactacttggcttgtttt 419
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaattaaacgtacctttgtaagatgtggctttctctaaactacttggcttgtttt 620

                                                                       
Query: 420 ccctgcctgtaagcagtaagtgctaaaaagaccaaggggtttttgtgttactgttatccc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 ccctgcctgtaagcagtaagtgctaaaaagaccaaggggtttttgtgttactattatccc 680

                                                           
Query: 480 tagtttagttatacactagaagctcagtgagaaaaagtcacaggactt 527
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtttagttatacactagaagctcagtgagaaaaagtcacaggactt 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space:   474606
Effective search space used:   474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)