TTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATCCTGTTCTCTGGTCAATATGGAGAATCCAGCTGAC
TCTATGAACACCTACCCTTACTAGAAGAGTATAGAAAATCACATGGAAGA
AAATAATTTTGAAATCCACAGCCATCATTTAAAGAATAAATGGTGTTACC
GATAGGGGGATACATTGTTTGAGGAATGGTTATGTGCAAATCTGCAGAGA
TATATATTATTTTGTTGAATACAAATAAAAAGAAATATACTTTTGGCAGC
ACAGATATGAAACCATTAGAATTGAGCAAGAAGGGGAAGTGGGATACATT
TACCTCTTTGAACCTATTATGGAAGCTTGAAATGCTGCTTTGTCTCTAGT
GGACATCACATTTCCTCCAGCACACACCAGAGAGTCAAGGAGGTTAATCA
GAGAAGGGAAAAGGAAGCTCAGAAGCTCACCACTCATGGCAGTCAGTGGA
ATAAGGCTGCATTGCTCCTCAATACGAGGATGGGTCAAATTTCCATTTCT
CATTACATATGAGCCAAAACACAGAAAAAAAACCTTTTTTTTTTTTTTGC
TTTTTTGTTTTTGGTTTTGATTTGGTTTGTTTTGCTTTGTTTTCTGAACT
GAAGAATACTCTAAAGCCCTTCTTTAAAGATTGGGCTTGAAACTGTAACT
GGGTCCACAACAGAAATTCAGTAAAGGCCGCATGGGAAAAGCCCCCCCTT
ACCAAATTATGGTTTAC

NNNCCTCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCACCAGTGATGTCAAG
GACCTGGCTGTGCTAGGGTGCCTGCATCGTGTAGAGTCCTCTTAATTTTT
TTTTTATATTTAGCTCACTTCCTCTGCCAGTCACTCCCTCCCACAATCCT
TACCCCATGTTCCCCCCCACTTCTCCTCTGAGAGAGTGGGGCCCTTCATG
GGTATCCTCCCACCCTGGCACTTTAAGTCTTTTCAAGGCAAGGTGCTTCC
TCTCCCACTGAGGCCAGACAAGGCAGCCCAGCTAGAAAAACATATCCCAC
AGACAGGCAACAGCTTTTGGAACAGACCCTGTTCCAGTTGTTTGGGACCC
ACATGACGATCAAGTTGCTCATCTCCTCCATATATTCGGGGAGGCCTAGG
TGCAGCCTGTGTGTGTTCTTAGGTTGGTAAAAACAAAACCTTTAACATTC
ATTTATCAGCACTGAAAAACATAAGACCAGTTTTCTCCTCAGGAAATATG
CAGCAAAATCCGAGTAAAGCCAGTTTTATTTTATGTATAAGAAAGGACGC
TTTTCATTCTGACACACAGAGAGCTGTCCTTCCCATGTAAGAACAACATG
GGCAGAGGCCGAGGAACTGGATGCTTGGGACAGTCCTTCTTGCCAACTTA
AGAGGAAAGAGGCTCTAAGAAAGGAAATCCCCTTGCGTCTGGTTTTGGTC
CCG

Query= MSMg01no463_b08.b1 MSMg01no463_b08.b1 CHROMAT_FILE:
MSMg01no463_b08.b1 PHD_FILE: MSMg01no463_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:20 2005
         (554 letters)



>mm_chr1_46668338_46669291
          Length = 954

 Score = 1027 bits (531), Expect = 0.0
 Identities = 548/555 (98%), Gaps = 5/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatcctg-ttctctggtcaatatggagaatccagctgactctatgaacaccta 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggaattctatcctgatt-tctggtcaatatggagaatccagctgactctatgaacaccta 688

                                                                       
Query: 63  cccttactagaagagtatagaaaatcacatggaagaaaataattttgaaatccacagcca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cccttactagaagagtatagaaaatcacatggaagaaaataattttgaaatccacagcca 628

                                                                       
Query: 123 tcatttaaagaataaatggtgttaccgatagggggatacattgtttgaggaatggttatg 182
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 tcatttaaagaataaatggtgttaccaatagggggatacattgtttgaggaatggttatg 568

                                                                       
Query: 183 tgcaaatctgcagagatatatattattttgttgaatacaaataaaaagaaatatactttt 242
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 567 tgcaaatctgcagagatatatattattttgttgaatacaaataaaaaaaaatatactttt 508

                                                                       
Query: 243 ggcagcacagatatgaaaccattagaattgagcaagaaggggaagtgggatacatttacc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggcagcacagatatgaaaccattagaattgagcaagaaggggaagtgggatacatttacc 448

                                                                       
Query: 303 tctttgaacctattatggaagcttgaaatgctgctttgtctctagtggacatcacatttc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctttgaacctattatggaagcttgaaatgctgctttgtctctagtggacatcacatttc 388

                                                                       
Query: 363 ctccagcacacaccagagagtcaaggaggttaatcagagaagggaaaaggaagctcagaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctccagcacacaccagagagtcaaggaggttaatcagagaagggaaaaggaagctcagaa 328

                                                                       
Query: 423 gctcaccactcatggcagtcagtggaataaggctgcattgctcctcaatacgaggatggg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctcaccactcatggcagtcagtggaataaggctgcattgctcctcaatacgaggatggg 268

                                                                       
Query: 483 tcaaatttccatttctcattacatatgagccaaaacacagaaaaaaaacc---ttttttt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 267 tcaaatttccatttctcattacatatgagccaaaacacagaaaaaaaacctttttttttt 208

                          
Query: 540 tttttttgctttttt 554
           |||||||||||||||
Sbjct: 207 tttttttgctttttt 193


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)