BAC Information

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BAC

Clone NameMSMg01-463O19
Chromosome1 (Build37)
Map Location 176,633,497 - 176,633,971
singlet/doubletsinglet
Overlap geneFmn2
Upstream geneLOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7, Fh1, Kmo, Opn3, Chml, Wdr64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O19.T7 (MSMg01no463_o19.b1)MSMg01-463O19.TJ (MSMg01no463_o19.g1)
ACCAG548462AG548463
length738746
length of high quality
(start - end)		529 (56 - 584)476 (84 - 559)
definitionCHROMAT_FILE: MSMg01no463_o19.b1 PHD_FILE: MSMg01no463_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:31 2005CHROMAT_FILE: MSMg01no463_o19.g1 PHD_FILE: MSMg01no463_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCAAGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAG
AATCCGCGGAATTCTTGATTTTTTCTATACCTCATTTTTTGATTGAGTTG
TTTGGTTTTTTGGTGGTTAGCTTCTTGAATTCTTTATATATTTTGGATAT
TAGCCCTCTATTGGATGTGGGGTCAGTAAAGATTTTTTTTCCCTATCTGT
AGGTTGCCAATTTGTCTAATTGGCTATGTCCTTTGCCTTACAAAAGCTTT
CCAGTTTCATGAGGACCCATTTATCAATTCTTGATCGTAGAGTTTGAGCC
ATTGGAGTTCTGTTTAGGAAATTTCCCCTGTGTTTCTTCTTTAAGATCTC
TCTCTCTCCCTCCCTCCCTCCCTCTCTCTCTCCCTCCCCCTCCCTCCCCC
TCCCTCCCTCTCCTCCTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTTCCTCCC
TTTCCCTCTCCTCCTTCCTTCTTTCCTTCCTTCCTTCCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCAAATGTTATTGAATGA
TATAGCAGCTAGTCACTGATAGATAGATCTTTTTCCCCTGAAGAAAGAAT
GAGACAATTATTAAAGGTTCCCCTCCTTCCCCGGGGGAGCTGGATTCTGG
AAAAAGATCCGGGGGTCCTACAAGGTGTTCTTAAGGCA

TCCAAANTCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATTGCTTATATGT
TTGAACTTTACAAGCTGAAATCACAGGGTGTGTTTTTTCCCCCATGCTTT
GGTTTTTCTAAAGACTGTTAACTGATGTCAGCATTAGTAATACAGCAAAT
ATACTTTAAGTTTTCTTGTTCAGTAGAATGTCCATTGAAAAAGATGCTGC
ATTTCCTTTGGCTGCTATCCTTCTGAAAAGAACCTGAGGGGCTTTGTTGC
TCTGCTATGATGTGAATCCAGTTTGTTCTTGCCCTTTTAGTATCTAAATG
CAAGCTGGCTCAGAGACTCCTTCCACCTCAAGCTCATTGAGAGTGACAGT
TTCTACAGAGATTGACTCAGCCAACATTCTCATCCAAACCCATAGCTATA
GTTCCTACCCATCAAAGACACTGGACCATAAGCCATCATTTGATACAACT
GTATCAAGAAAGGCTACTGATAAAAAACACCAAAATTACTGAACAAAAGG
CACTTCACTGAGCTAGGAGACCTGTTGTCCTGAAGAGCAGGCATAGAAAT
AGTCCAAACAAAAAGAACCCCACATAATGGATGTCTTTACAGGAATGCTA
AAATGAGAAGCAGATGTTTGCCTAATATGTCCAAGCCCTAATTACACATT
GTTTCTCAAGTCCCTTGGAAAAAAAAAACAACCCGATTGCAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o19.g1 MSMg01no463_o19.g1 CHROMAT_FILE:
MSMg01no463_o19.g1 PHD_FILE: MSMg01no463_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:31 2005
         (476 letters)



>mm_chr1_176633297_176634171
          Length = 875

 Score =  891 bits (461), Expect = 0.0
 Identities = 472/479 (98%), Gaps = 7/479 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgattgcttatatgtttgaactttacaagctgaaatcacagggtgtgttttttccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 attgattgcttatatgtttgaactttacaagctgaaatcacagggtgtgttttttccccc 616

                                                                       
Query: 61  atgctttggtttttctaaagactgttaactgatgtcagcattagtaatacagcaaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atgctttggtttttctaaagactgttaactgatgtcagcattagtaatacagcaaatata 556

                                                                       
Query: 121 ctttaagttttcttgttcagtagaatgtccattgaaaaagatgctgcatttcctttggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctttaagttttcttgttcagtagaatgtccattgaaaaagatgctgcatttcctttggct 496

                                                                       
Query: 181 gctatccttctgaaaagaacctgaggggctttgttgctctgctatgatgtgaatccagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctatccttctgaaaagaacctgaggggctttgttgctctgctatgatgtgaatccagtt 436

                                                                       
Query: 241 tgttcttgcc---cttttagtatctaaatgcaagctggctcagagactccttccacctca 297
           ||||||||||   |    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgttcttgcccagc----agtatctaaatgcaagctggctcagagactccttccacctca 380

                                                                       
Query: 298 agctcattgagagtgacagtttctacagagattgactcagccaacattctcatccaaacc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agctcattgagagtgacagtttctacagagattgactcagccaacattctcatccaaacc 320

                                                                       
Query: 358 catagctatagttcctacccatcaaagacactggaccataagccatcatttgatacaact 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catagctatagttcctacccatcaaagacactggaccataagccatcatttgatacaact 260

                                                                      
Query: 418 gtatcaagaaaggctactgataaaaaacaccaaaattactgaacaaaaggcacttcact 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtatcaagaaaggctactgataaaaaacaccaaaattactgaacaaaaggcacttcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space:   403090
Effective search space used:   403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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