Query= MSMg01no463_p04.b1 MSMg01no463_p04.b1 CHROMAT_FILE:
MSMg01no463_p04.b1 PHD_FILE: MSMg01no463_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:33 2005
(612 letters)
>mm_chr1_188217248_188218259
Length = 1012
Score = 1023 bits (529), Expect = 0.0
Identities = 565/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgttttgctctgtaccccatttttaaataaggttatttgattttctagagtc 64
||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 579 gaattctttgtttagctccgtaccccattttttaatagggttatttgattttctagagtc 520
Query: 65 catcttcttgagttcttttttaaaggaaccctacactacatccccaccctaatcctaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catcttcttgagttcttttttaaaggaaccctacactacatccccaccctaatcctaagg 460
Query: 125 aaatcacattgatcctggaaaagttaaagaatcagcttgctgatgcgagcagacatatcc 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 459 aaatcacattgatcctggaaaagttaaagaatcagcttgctgatgcaagcagacatatcc 400
Query: 185 cacatggacagtacagcctccagaagaaagagaccccagagttactgatgccagctttgc 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 399 cacatggacagtacagcctccagaagaaagagaccccagagttactgacgccagctttgc 340
Query: 245 caccaccggcttccgggatactgggaaggtcatgagaccctttctgctctttaagtttaa 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caccacgggcttccgggatactgggaaggtcatgagaccctttctgctctttaagtttaa 280
Query: 305 ataaataaataaataaataaataaataaataaataaatgaaagagcaaacaaagaaacaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ataaataaataaataaataaataaataaataaataaatgaaagagcaaacaaagaaacaa 220
Query: 365 ataaatgacgtttgttcttgggaaggac----tttatgagaccacttgaggagtatagag 420
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 219 gtaaatgacgtttgttcttgggaaggactttatttatgagaccacttgaggaatatagag 160
Query: 421 gggttaggaaacaggttaaaaatgaagtttgtcatgaggagaaagtaaaaagaagtgggc 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 159 gggttaggaaacaggttaaaaatgaagtttgtcatgaggagaaaggaaaaagaagtgggc 100
Query: 481 ctatgaacatttcaaagggatgtgttttaaattctgggaaacatttaagacaaagtttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctatgaacatttcaaagggatgtgttttaaattctgggaaacatttaagacaaagtttta 40
Query: 541 taggatgaatgtggtattgcaagtgtgtccctgaaaaat 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 taggatgaatgtggtattgcaagtgtgtccctgaaaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_p04.g1 MSMg01no463_p04.g1 CHROMAT_FILE:
MSMg01no463_p04.g1 PHD_FILE: MSMg01no463_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:33 2005
(514 letters)
>mm_chr1_188084512_188085425
Length = 914
Score = 917 bits (474), Expect = 0.0
Identities = 504/518 (97%), Gaps = 9/518 (1%)
Strand = Plus / Plus
Query: 1 cagatgtctg-cc---tgtttttttggggggggggcactcaggtggcacactcgggctgg 56
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 cagatgtctgtccagatgttt-----gggggggggcactcaggtggcacactcgggctgg 256
Query: 57 aatcagaaaaggaaatctgggacatgggaacacacttgtgcttttgataaaagggatatt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 257 gatcagaaaaggaaatctgggacatgggaacacacttgtgcttttgataaaagggacatt 316
Query: 117 acctaaacagcttcacccaggtgtttccaacaaggctcatctagacagacaagccatgta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acctaaacagcttcacccaggtgtttccaacaaggctcatctagacagacaagccatgta 376
Query: 177 tgctagagtcctatatattcgaaaataggtctctggcccaagtcacagtgtgaacttggg 236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgctagagtcctatatattcaaaaataggtctctggcccaagtcacagtgtgaacttggg 436
Query: 237 aattattctttgtaggtgtgagagatgtgttgtaatgtctaggaaagaattgatggagaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aattattctttgtaggtgtgagagatgtgttgtaatgtctaggaaagaattgatggagaa 496
Query: 297 cgaagacaagtgaccttggaaggcatgtgggcccagagcttagaaacagcagagatacca 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 497 cgaagacaagtgaccttggaaggcatgtgagcccagagcttagaaacagcagagatacca 556
Query: 357 cagatggggaagaatatagtcaacacacagcatgttttcaataagaggagaaagaaaaga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagatggggaagaatatagtcaacacacagcatgttttcaataagaggagaaagaaaaga 616
Query: 417 ttcccacattctacaggagcagcgctaatgcaaatatactacactggggtcctgagtgaa 476
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcccacattctacaggagcagtgctaatgcaaatatactacactggggtcctgagtgaa 676
Query: 477 tctgaattatgcgcagtttgaattatgctcatattgta 514
||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctgaattatgcgcagtttgaattatgctcatattgta 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
