BAC Information

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BAC

Clone NameMSMg01-464C17
Chromosome1 (Build37)
Map Location 32,391,133 - 32,391,643
singlet/doubletsinglet
Overlap geneKhdrbs2
Upstream geneLOC624275, LOC666056, LOC100041238
Downstream geneEG408191, EG633498, LOC213711, LOC100040828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464C17.T7 (MSMg01no464_c17.b1)MSMg01-464C17.TJ (MSMg01no464_c17.g1)
ACCAG548648AG548649
length769767
length of high quality
(start - end)
41 (194 - 234)519 (73 - 591)
definitionCHROMAT_FILE: MSMg01no464_c17.b1 PHD_FILE: MSMg01no464_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:50 2005CHROMAT_FILE: MSMg01no464_c17.g1 PHD_FILE: MSMg01no464_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAGGATCCGCGGAA
TTCTTTATTTTCATAACATTTTTAAGTTTTAACTAATTAGTGCTATACTT
ACAGTGATGTCTAGTCAATATTTATGATTTCATTGCTCTCTGATGATGTC
ATATTTTGTATCACTATTAATCTTATTCTCAATAATGTAACCAACTCAAA
AATTAATATTACTCTACTTATCACTAACACCTAGCGAATATTCATATCAT
GCTTCACAGTGTCGAAGGGCATTGGCAGGCATTAAGTAACATAATTTTCA
CAATACTTCTTTTATTTTTACAATCTTACCTTCATAGTGCGGACGTAAAA
TATCTGATAGATGTCTCGCCACTTCCCCATATTATTTGTTCCTCATATCC
ACCTTTAGAGACATTTCTATTCTTTGTAATACTCTATGACTTTTTCATTC
TCGAACACCAATCCCACTTTTAATGATAGGAATACCTTATTATATTCCTC
ATCACATTTGTTTACCATTCTAACTCAAATTTCTCATTTTCATCTGATCT
GGTTGTCAGGTTACCCACACTCGTTAAATGTTGCCTATCCTTCTATTCTG
TTACTTTATCCTTCCCCCCATTCCCTTCTAAATCTCTACACAATGCCCCT
CCTTTCTTATTTTATCATACCCCTTATTTTTACTTATCCCACCTTCCTCA
TCTCTTTTTCTACTTTTTCTTTCTCTTGTTTCTAATCGCCCTACTTCCTA
ATTCCTATCCCTCTCTTCT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAACTGAACAATTTCTACCAGTTTAGAA
AGTGAGGAGCAAAGTGGTTCAGATGTGAAATAAATTATTACAAACATTAA
ACTTGATGTCCCTTAGCGTGTTGTGGCCTTCGGGTCAGATGATGCATGTA
ATAAATACCACTGAAACCCTTCACGGCAAAACCAGGATTCTCCCGTTTTC
TGATAAATATATGGCATAACCTCGGCAAACGGGATCCAAGTGAAATACTG
AAGAGGATCCAAGGATTTATGGATGGCATTATGTGGTAGTAGAAGGAAAA
GTATCCAGCTAGGGAATTTAAAAACCCAACCTTTGCCCCACCTGGGGATC
CATCACATTTATGTTCACCAAACCCAGACACTAATGAGGGCACCAAGAAG
CGCTTGCTGACATGTGCCTGATATGGCTGTCATCTGAGAGGCTACCAGAG
CTTGACCAATACAGAGGCAAAATCTCGCTGCCAACCATTGGACTGAGCAT
GAGGTCCCCATTGGAAGAGTTAGAGAAAGGACTGAAGGAGATGAAGGGGT
TTGTAGCCCCACAGGAGGAACAATATGAACCAACCAGACCCCCTTGAGGT
CTCTGGGACCGAACCACCTACCAAAGAATACACCTGGGAGGAACCCATGT
CTTCTTACCCCCTATTTTCCCACAGGAATGTCCTTTGTTGAACATCATTG
GGAAGTAGAAGGCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_c17.g1 MSMg01no464_c17.g1 CHROMAT_FILE:
MSMg01no464_c17.g1 PHD_FILE: MSMg01no464_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:50 2005
         (519 letters)



>mm_chr1_32391133_32392051
          Length = 919

 Score =  919 bits (475), Expect = 0.0
 Identities = 502/511 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactgaacaatttctaccagtttagaaagtgaggagcaaagtggttcagatgtgaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taactgaacaatttctaccagtttagaaagtgaggagcaaagtggttcagatgtgaaata 452

                                                                       
Query: 61  aattattacaaacattaaacttgatgtcccttagcgtgttgtggccttcgggtcagatga 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 451 aattattacaaacattaaacttgatgtcccttagcatgttgtggccttcgggtcagatga 392

                                                                       
Query: 121 tgcatgtaataaataccactgaaacccttcacggcaaaaccaggattctcccgttttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 391 tgcatgtaataaataccactgaaacccttcacggcaaaaccaggattcttccgttttctg 332

                                                                       
Query: 181 ataaatatatggcataacctcggcaaacgggatccaagtgaaatactgaagaggatccaa 240
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ataaatatatagcataacctcagcaaacgggatccaagtgaaatactgaagaggatccaa 272

                                                                       
Query: 241 ggatttatggatggcattatgtggtagtagaaggaaaagtatccagctagggaatttaaa 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggagcaatggatggcattatgtggtagtagaaggaaaagtatccagctagggaatttaaa 212

                                                                       
Query: 301 aacccaacctttgccccacctggggatccatcacatttatgttcaccaaacccagacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aacccaacctttgccccacctggggatccatcacatttatgttcaccaaacccagacact 152

                                                                       
Query: 361 aatgagggcaccaagaagcgcttgctgacatgtgcctgatatggctgtcatctgagaggc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 151 aatgagggcaccaagaagcgcttgctgacatgtgcctgatatggctgtcacctgagaggc 92

                                                                       
Query: 421 taccagagcttgaccaatacagaggcaaaatctcgctgccaaccattggactgagcatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 91  taccagagcttgaccaatacagaggcaaaatctcgctgccaaccattggactgagcatgg 32

                                          
Query: 481 ggtccccattggaagagttagagaaaggact 511
           |||||||||||||||||||||||||||||||
Sbjct: 31  ggtccccattggaagagttagagaaaggact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)