BAC Information

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BAC

Clone NameMSMg01-464E19
Chromosome1 (Build37)
Map Location 155,256,192 - 155,256,566
singlet/doubletsinglet
Overlap geneEG626058
Upstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795
Downstream gene1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464E19.T7 (MSMg01no464_e19.b1)MSMg01-464E19.TJ (MSMg01no464_e19.g1)
ACCAG548748AG548749
length694792
length of high quality
(start - end)
41 (106 - 146)364 (125 - 488)
definitionCHROMAT_FILE: MSMg01no464_e19.b1 PHD_FILE: MSMg01no464_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:01 2005CHROMAT_FILE: MSMg01no464_e19.g1 PHD_FILE: MSMg01no464_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTGTCTACTTCACAAANGANCACATTCGGACCGCNGGGAACCNACTGTAC
CCCACGAGGNGGAANCACGNNCNNTGACTAAACAACGGCAAATTTATCCG
TTACGCCGGTTCCTGGGGGAATTAAGGGGGTGGTTTTGAGTTACCTGTTG
GATAAAAGACAGGAGGAGGAGGAAAAACAAGAGGAAGGAGGAAGCGACAT
GAGGGAGAGGATGTTTTTTTGGCAGGAAACAGAAGTATCAGGATACCTGC
TGGGGAGGCAGCCAGGCCAGTTTTTTTTTAGACCAGGGGACACCCCACCC
CCAGATTGTTTCCCCCCCACCACCCTATCCTGATCCCTTTACCGTTTCTA
CCCGGTTTTCTTTTCTTGCCGATCTACTCATATATCTGCCTCCACACCAT
TTGTTTCCCGTTTAACCAGCACCTTATTGACCCTAACTTTGTCGTTATTG
CGNATGGCTTGTTCGAGCCATCCCTCGTTCCTGACCCCGCTCTCTTATCA
CACTCTACTTTTTATATCCAACGATTTCTTACCCCACCTCCCCCTCTTTT
ACATCCCCTATTTACCTTTTTTTTTTTTTTTCTTCCTTACCCCTTTCCTT
TCCCAACTTCCCCATTCCCCTCCTCCTTATTTCCCTCATTCTTCCCCTTC
CTATCCTTCCCCTATCCCCCTTTTTCCCCTTCGCTCCCCGATCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAGTTCAGGTCCCGACTATTTCCT
GAGTATTACAGTTTTCTGTACTATGCCATCACCAAGTCCCAATCTGCACG
ATGCTTTGTCATGGATTTTTCTTCTTCGAGTTAAGTTTGAGCTTTGGGAT
GGTAGTCCATCACTCTCCATGGCTCTCTTCTTCTTCCTCACTATCCCTTT
CCATGATACTTAGTGTCTAACTGGTGAGAGAATCACATAGCTGGAGGGGT
AGAATGGGGGATTACATTTTCTGTGCTGCAAAGGGTATTTGTCCTTCATA
CTAGGTTGTTCCCTCTCTGACACTGCTCACCAGTATTTCAGCTAAGACCT
TCCTCAGCACAGGGCTGTCAAGCTATAGGCTTCCAGTCAGTGTGCAGCTA
CTAAATCCTGTAGCTCAGTGAGTCTGTTTTGTGCTATTGCTGCTTGGGGG
GGGGCTTCAGCATCTGTCAGTTCGTCACTTCTATCTTGATTCCTTCGGTT
CACTCTTGTCTAATATTATCTCCTTACATTTTTTTGTATTACTCACCTTT
CCTTTTTCTTCTATAAAAAGCCTTCTTGGTTTTAATTTTCCTTCTTGTTC
CTTTTTCGTATTTCCATCCTCCCCTCCTGTCCTCTTTTCCTATCATGATT
ATTTTTCTTTCCCCCTTTTTTTTCTCCCCCCATTTCCCCCTCTTCTTTTC
TACTAACCATACACTACTGCTTTTTTATATGTGTATCTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_e19.g1 MSMg01no464_e19.g1 CHROMAT_FILE:
MSMg01no464_e19.g1 PHD_FILE: MSMg01no464_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:01 2005
         (364 letters)



>mm_chr1_155255811_155256573
          Length = 763

 Score =  445 bits (230), Expect = e-129
 Identities = 334/382 (87%), Gaps = 27/382 (7%)
 Strand = Plus / Minus

                                                                       
Query: 3   catcaccaagtcccaatctgcacgatgctttgtcatggatttttcttcttcgagtt-aag 61
           |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 756 catccccaagtcccaatctgcacgatgctttgttatggatttttcttcttcgagttgaag 697

                                                                       
Query: 62  tttgagctttgggatggtagtccatcac-tctccatggctctcttcttcttcctcactat 120
           ||||| |||||| |  |||||||||||| |||||||||||   |||||||||||||| ||
Sbjct: 696 tttgacctttggaacagtagtccatcacttctccatggct---ttcttcttcctcacaat 640

                                                                       
Query: 121 ccctttccatgatacttagtgtctaactggtgagagaatcacatagctggaggg------ 174
           |||||||||||||| |||||||||||||||||||| ||| |  || ||   |||      
Sbjct: 639 ccctttccatgatatttagtgtctaactggtgagaaaattatgtaact---gggaattat 583

                                                                       
Query: 175 ----------gtagaa--tgggggattacattttctgtgctgcaaagggtatttgtcctt 222
                     ||||||   ||||| |||||  ||||||||||||||||||||||||||||
Sbjct: 582 tattattattgtagaaagggggggtttacaacttctgtgctgcaaagggtatttgtcctt 523

                                                                       
Query: 223 catactaggttgttccctctctgacactgctcaccagtatttcagctaagaccttcctca 282
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 522 cgtactaggttgttccctctctgacactgctcacctgtatttcagctaagacctt-ctca 464

                                                                       
Query: 283 gcacagggctgtcaagctataggcttccagtcagtgtgcagctactaaatcctgtagctc 342
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 463 gcacagggctgtcacgctataggctttcagtcagtgtgcagctactaaatcctgtagctc 404

                                 
Query: 343 agtgagtctgttttgtgctatt 364
           ||||||||||||||||||||||
Sbjct: 403 agtgagtctgttttgtgctatt 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space:   267670
Effective search space used:   267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)