BAC Information

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BAC

Clone NameMSMg01-464F01
Chromosome1 (Build37)
Map Location 119,287,557 - 119,287,901
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F01.T7 (MSMg01no464_f01.b1)MSMg01-464F01.TJ (MSMg01no464_f01.g1)
ACCAG548760AG548761
length787758
length of high quality
(start - end)
250 (75 - 324)437 (78 - 514)
definitionCHROMAT_FILE: MSMg01no464_f01.b1 PHD_FILE: MSMg01no464_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:02 2005CHROMAT_FILE: MSMg01no464_f01.g1 PHD_FILE: MSMg01no464_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACGAAATTCTCCGGCAAATGGTTGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGGAATGTACTCA
CTGATAAGTGGATATTAACCCAGAAACTTAGTATAGCGAGATATAAGGTA
CAATATGTAAAACATATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGA
CACTTTGCTCATTCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTAC
AGAGACAAAGTTTGGAGCTAAGACTATTTTTATGGTCCATCTAGAGACTG
CCATATCCAGGGATCCATCCCATAATTAGCCTCCAAGCGATGACACCATT
GCATACACTAGCAAGCCTTTGTTGCAAGGCCGGTGATATAGCTGTCCCTT
GTGAGACTAGGCCGGGGCCTAGCACACACAGAAGTGGATGCTCACAGTCA
ACTATTGGATGGATCACAGGGCCCCCAATGCAGTAGCTAGAGAAAGTATC
CCAGGAGCTAAAGAGATCTCGTATTTCTATCGCTAGTACCAACATTTATG
AACTATTCAGTATTCCTAGATCTCCCTGATTTCTAGCTGCATCATGGATC
ACAACGATGACCCTATTCTGTCCCACCACTGGGACTATAAAAGACCTCTT
TGGGCCATGGCCTACATAATTTTGTTTACCTTCCTTATATTTGGCGAATT
CGCCCCCCGATTTCTGCTTCTACCCGTTGTCGTTTTG
NCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGTGACACACTATTGGCT
TATTCAAACATCAGCAGAAAAATTACATGTACGTGCAGGGTGTCAGAGTT
CTGTGAGTTGTTGACTCAGTTTAGATAGCCCTGTTATGTCCTCACATTCC
TCTTAATCTTTAAGGTTAAGCTTTTCCCAGGAATGTTTTAACTACGGGGC
ATACCCGGGTTTGTTTTTCTTTTTTCTCAGCCCCAGGCAGCATCTAGGCT
CTCAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCATAT
AAATTTCATCTTTCTTTCATTACCAGTATTTAGGCAACTACCTCTCCAGT
TTCCCATGATGGATGTTTCTTGTTGACTTCAATGTCAGTTGTTCTTATAA
ACTTTATCTGTGGTTGTGTCTGAGGAAGGTGTCATTAAAGAAAGAGTGGT
ATCAAGTGACTGTAGGTTGGTAGGTTTCTTCTGCTCCCACCTCACTCCAT
AGAGATGAATAGTTCTATTTTGCGTGCTCATGGAAGCACTGAAGTTTAGG
ACAGCTTTGCTCGATTACTCTCCTGGGCCAGATCTAAATCCTTTTCCTTC
CAGGTTGATTTCATAACTGTTGGAAATATTTTTATTTCTCCTCCCGGGCA
GGCTTTCCAATCTTCTTATTCTTTCCCCCGATGTTTTCGGCGAGGTTTAT
ATTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f01.g1 MSMg01no464_f01.g1 CHROMAT_FILE:
MSMg01no464_f01.g1 PHD_FILE: MSMg01no464_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:02 2005
         (437 letters)



>mm_chr1_119287065_119287901
          Length = 837

 Score =  594 bits (307), Expect = e-174
 Identities = 337/347 (97%), Gaps = 3/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 90  cagtttagatagccctgttatgtcctcacattcctcttaatctttaaggttaagcttttc 149
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 837 cagtttagatagccctgttatgccctcacatttctcttaatctttaaggttaagcttttc 778

                                                                       
Query: 150 ccaggaatgttttaactacggggcatacccgggtttgtttttcttttttctcagccccag 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ccaggaatgttttaactacggggcatacccgggtttgtttttcttttttctcagccccag 718

                                                                       
Query: 210 gcagcatctaggctctcaaacaaccagcaatttctgagtactttatatgacttacaggtc 269
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gcagcctctaggctcacaaacaaccagcaatttctgagtactttatatgacttacaggtc 658

                                                                       
Query: 270 atat-aaatttcatctttctttcattaccagtatttaggcaactacctctccagtttccc 328
            | | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 657 -t-tgaaattttatctttctttcattaccagtatttaggcaaccacctctccagtttccc 600

                                                                       
Query: 329 atgatggatgtttcttgttgacttcaatgtcagttgttcttataaactttatctgtggtt 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atgatggatgtttcttgttgacttcaatgtcagttgttcttataaactttatctgtggtt 540

                                                          
Query: 389 gtgtctgaggaaggtgtcattaaagaaagagtggtatcaagtgactg 435
           |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 539 gtgtctgaggaaagtgtcattaaagaaagagtggtatcaagtgactg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)