BAC Information

Click to search

BAC

Clone NameMSMg01-464G03
Chromosome1 (Build37)
Map Location 160,775,448 - 160,775,656
singlet/doubletsinglet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464G03.T7 (MSMg01no464_g03.b1)MSMg01-464G03.TJ (MSMg01no464_g03.g1)
ACCAG548811AG548812
length778764
length of high quality
(start - end)
209 (74 - 282)36 (81 - 116)
definitionCHROMAT_FILE: MSMg01no464_g03.b1 PHD_FILE: MSMg01no464_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:08 2005CHROMAT_FILE: MSMg01no464_g03.g1 PHD_FILE: MSMg01no464_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGTTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAATCCG
CGGAATTCTCTCTTTGACCACCGTGGTCTACAAACCCAAGAAAAGATGTG
ACTGAGCCCATACACTGAAATTCTAATCTTCACTTAGTTTGGTTACTTTA
AAAATATAGTTTACTGGTTTTTCAATAGCTGCTCTAGATTTTCTTGGTTC
AAAACATTACATGACATCCTCCTACTTTCTCCAGGACTATTATATTAAAT
GTTATCTCACCAAGCACTTACTATAATACATTTACTAGTGCAGAATATTT
GAGGCCCATATAAACACATATTTTTTCTAATACGAGGTTGTTCATAGGAT
TGGGTATTTATCTTTGTTTCATATCCCTGATATGCTTCTTACTTCGTTGC
ACTTACTAGCCTTTTTTATTCTTATGTGAACTCTTAACATATTTGATTTC
CTCTCGTTATTTCACTCTTGGTTATATGCTTCACCACTATGTTTTCGCTG
AACTTGGATGTTACCTCCTTATAATCTTCCCCTTTTCTCGACCTCACTCT
CTTTTGCCTTTACTGTGTTATATGTGCATGTCTTCAGTTATTTCTTACGC
TTTTTTTTACCCCCCCGCCCCCTCTTTTTCCTTTCCCTTATTCCCTTCCT
TTTTTTTTTTTTCTTTCTCCTTTCTTTTTGCACTATTCCCCGCATCCTTC
TTTATCTGCATTCCCCTTTATCTTCCTTTTTTTTCTTCTCCACCTTTATT
CCACTTATTCCTCTTCCATTCCCTTACT
CACAATGAAGTGAGTAGGCCGGGCGGCCGCCTGGTTTCAAAATTTAGGNG
AACTATAGAATTTTCTCAAAAATTCAGGNTATCCTATAGCAAGGTGCCTT
CCACAGGGGTTAAGGCTTATACTGTTATATCTGTGCAATAACGTCAGTAG
GACAAGGTGGTGTGACATGACACCATGCTTTCATAAGGTCTGGAAGGCCC
AAAATGAGAATCAAGCCCTGTAGGAGTTAGAGGGCTAATTGTACAGAAGA
TTGTACTGTACGAAGGAATCCGCAGGCGGATGCTGCCCTCTGACCTGTCT
GCAGGCAGAGGTAGATGTTTTTTTATTTAGAATTGAAGGAAAAAGAGGGA
AACATTACTATCAGACCATCCCTGCCAGCCAATTCATTTCCTTTTTTATG
TGTCTAGAACTATTCTAGCCATTGACTTCTTGCTCTTTGTTATTGTAACT
TGTATATTTTGACTCATAATCTATCTCATCCTCTTATATTCTCATCATAT
ATCTCTATTTTCATCTTCTTTTATATTTCTTCTACTCTCCTTCTTCTTTT
TTTATTATCACTTTTTTTCCTTTAACCTCTTCCCCCTTTTCCTATACCCT
CTCCCTGTTTATTTTTTCCGCAAATCCTGCTATTCCCATTTTCACCCACT
GACCTACTGGCTTATCTTGCTTCATTTTTTTTCTTTCACCTTTCATTCCC
CCCCTTTTGCTCCCTTTCTTCTGGCTTCATACTCTCCTTTTCCTTATACA
ATTCAATTACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_g03.b1 MSMg01no464_g03.b1 CHROMAT_FILE:
MSMg01no464_g03.b1 PHD_FILE: MSMg01no464_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:08 2005
         (209 letters)



>mm_chr1_160775248_160775856
          Length = 609

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtctacaaacccaagaaaagatgtgactgagcccatacactgaaattctaatcttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tggtctacaaacccaagaaaagatgtgactgagcccatacactgaaattctaatcttcac 350

                                                                       
Query: 61  ttagtttggttactttaaaaatatagtttactggtttttcaatagctgctctagattttc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 349 ttagtttggttactttaaaaatatagtttgctggtttttcaatagctgctctagattttc 290

                                                                       
Query: 121 ttggttcaaaacattacatgacatcctcctactttctccaggactattatattaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 289 ttggttcaaaacattacatgacatcctcctactttctccaggactattatattaagtgtt 230

                                        
Query: 181 atctcaccaagcacttactataatacatt 209
           | |||||||||||||||||||||||||||
Sbjct: 229 aactcaccaagcacttactataatacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)