CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTTATCGTATTTTTTTAATGACGTTTCAAAAATGATGGCAAAGG
ATAATTGCAATAGAAGATATCCCAGTGTGTTCTGTGAGAATAAAATAAAA
ATAAAAAATTGCCAGGTGGCTACGGTTGCTCACGTATGTAATCCTAACAT
TCAGGAGCTGAGGTAGGATTGCCAAGAGCTGGAAGTCAGCTTGGTCGCGT
GGAAAGTTTCAGATCGCCCCAGGCTGTGGGGTGAGACCTAGTCTCAAAAA
TTCAAAAGCAAAATTAAATAAGTAAAACCATATTACTAAATAGTTTCCCT
ACTGTATTATAATGTAATAAGGAAAGAGAGAACGAAGGAAGGACAAAGGA
TGGAAGGAGGAAGAAAAGAAAAACTGCTATGTTAGCATAGTTTTTTTTTT
ATTAGGGTCACTCTGGTTTTACAAAAACAGAAATTCTGTTTTGTCAGTGC
ATCTGAAAGTCTTTATGAGAACCTTGTGAAAGCTATTGACCCTTTGATAA
ATACACCACACACACACATACACACTTATGTACACACACATAAATACACA
CAGAGGCATGTACACATACCCAAGTACACACACACACACACACACACTCA
CACGCACACACAAACATACACCCTTTATTTTTGGTATTCCCTCTGAGAGG
TTTCGGGGAATCCGTTGAAAGCCACTCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGAAGGGTAAGGTAACTATAAT
TAGCTGTTTGGTTTTTTTATATATATACCAGCATAAGAAACCAGTACCTG
GAAGCTTTGTAAGTGAAGTCAGTTTAGGTCATCACCGAAGGATTAACAGA
AAGTGTCATAAGTCATCTTCCTTGCTTTTAAGATGAACTGTGTATATTTG
TACTAAATATTAACAATGTCAGCTATTATTTTATGAGCAAAAATATAATT
AAAACAAAATTTGGGTTAGAAAAATTTGGTAAGGTAAAAATTGTAATAAT
TGGGACTGTTGCAATAAATGACCACATCTAGTATTTAAAACATAACTTAG
TATATATTTTGTTAACATCACATTTTATACCCATATTTCAAGAGAGAGTT
TAATTGTAAGTTGCATTTCCCCTAAAGAAATGGTTTTCAATTTCCAATTT
AAAAGTATATACCTAGAGACAGTGTCTTCCTTACTATTAAATGATTCCAT
TTACAGAGTTTTTCTTTTGTTGTTGTTGTCTTGGTTGTCTTTGCTCAATT
ACCACCCCTACCCCTCCTTTTCTTTATTCCTACCTTCCCTGCTTCCACCG
CCTCTCCACTTCCTCCCTCACTGTCACTCCTTTTTTTTACACACCTCCTC
TCCCTCCACCCTTTTTTCCTTTTCTTCTTTGG

Query= MSMg01no465_a05.b1 MSMg01no465_a05.b1 CHROMAT_FILE:
MSMg01no465_a05.b1 PHD_FILE: MSMg01no465_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:57 2005
         (576 letters)



>mm_chr1_158934918_158935893
          Length = 976

 Score = 1052 bits (544), Expect = 0.0
 Identities = 565/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagttatcgtatttttttaatgacgtttcaaaaatgatggcaaaggataattgc 64
           |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcaattgtatttttttaatgacgtttcaaaaatgatggcaaaggataattgc 264

                                                                       
Query: 65  aatagaagatatcccagtgtgttctgtgagaataaaataaaaataaaaaattgccaggtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagaagatatcccagtgtgttctgtgagaataaaataaaaataaaaaattgccaggtg 324

                                                                       
Query: 125 gctacggttgctcacgtatgtaatcctaacattcaggagctgaggtaggattgccaagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 gctacggttgctcacgtatgtaatcctaacattcaggagctgaggtaggatggccaagag 384

                                                                       
Query: 185 ctggaagtcagcttggtcgcgtggaaagtttcagatcgccccaggctgtggggtgagacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggaagtcagcttggtcgcgtggaaagtttcagatcgccccaggctgtggggtgagacc 444

                                                                       
Query: 245 tagtctcaaaaattcaaaagcaaaattaaataagtaaaaccatattactaaatagtttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagtctcaaaaattcaaaagcaaaattaaataagtaaaaccatattactaaatagtttcc 504

                                                                       
Query: 305 ctactgtattataatgtaataaggaaagagagaacgaaggaaggacaaaggatggaagga 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctactgtattatagtgtaataaggaaagagagaacgaaggaaggacaaaggatggaagga 564

                                                                       
Query: 365 ggaagaaaagaaaaactgctatgttagcatagttttttttttattagggtcactctggtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaagaaaagaaaaactgctatgttagcatagttttttttttattagggtcactctggtt 624

                                                                       
Query: 425 ttacaaaaacagaaattctgttttgtcagtgcatctgaaagtctttatgagaaccttgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacaaaaacagaaattctgttttgtcagtgcatctgaaagtctttatgagaaccttgtg 684

                                                                       
Query: 485 aaagctattgaccctttgataaatacaccacacacacacatacacacttatgtacacaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 aaagctattgaccctttgataaatacaccacacacacacatacacacttgtgtacacaca 744

                                           
Query: 545 cataaatacacacagaggcatgtacacatacc 576
           |||||||||||||| |||||||||||||||||
Sbjct: 745 cataaatacacacacaggcatgtacacatacc 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)