BAC Information

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BAC

Clone NameMSMg01-465D04
Chromosome1 (Build37)
Map Location 11,776,515 - 11,776,761
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneLOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465D04.T7 (MSMg01no465_d04.b1)MSMg01-465D04.TJ (MSMg01no465_d04.g1)
ACCAG549434AG549435
length738763
length of high quality
(start - end)
269 (42 - 310)273 (69 - 341)
definitionCHROMAT_FILE: MSMg01no465_d04.b1 PHD_FILE: MSMg01no465_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:13 2005CHROMAT_FILE: MSMg01no465_d04.g1 PHD_FILE: MSMg01no465_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGAGCCGCGGAATT
CTGAGATTTCTTCTTCTTGTGTTCTCAGTAGAGGCTCTTAGTAGATCAAA
GGTGGAAGGGCACATATTTGCACTATTGATTTACTGTTCACTGTTCAGCA
GGGCTGGGAAAATCCTCTGTCTCCCTCACAGATCTGAAAAGTGGTCCTTG
GGAAGATGAAGAAAAGCAGCTCAACTGTAAAATCTCATTCTTTGTGAGCA
AAGAGGACCAGGGTGAATAGGGTTGTAAAGCCACCATGTGGCTGCTGGGA
ATTGAATTCATGATCTCTGGAAGAGCAACCAGTGCTCTTAAACACTGATC
CATCTCAACAGCCCTCAAAACAATTTGTTAAAAAAGATCTCTCCAAATTT
TATGAGTTGTGACTTCTCACAAACATAACTTTAACCTGAGTTTCTAGCAG
TGACCAAGCTCTGTTATTTCTAAGTGTAGTCTCTTTCAGCTGGTTGTCTG
ATACCTTATTGTCTAGCCCAAGAACTATCCCCCAACATGTTGTAGTTCCC
ATGCTCCTCTAGAGGATTTCAAGCTACTCTTTACCAGGTTGAGATATTTA
CCTGCCCGCCCCCTCTCCTGAAAATATCATTGCTGAATTGGTATAGCTGC
CTAACAGTTCCTTGCTTCCTCATCCGTTTCCTTTTACTCGTTTTTCCTCA
CTTTTCTTTCGCCTTTGAACAAGGCTATTCCCGTACCC
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGATCCACTTAGATTTGACTTTAGTACAAG
GAGATAGGAATGGGTCAATTTGCATTCTTCTACAGGATAACTGCCAGTTG
TGCTAACACCATTTGTTTAAAATGCTGTCTTTTTTCCACTGGATGGTTCT
AGCTCCCTTGTCAAAGAACAAGTGGCCATAGGTGTGTGGGTTCAGTTCTG
GGTCTTCAATTCTATTCTGTTGTTCTACTTGTCTGTAGACATACCAGTAC
TATGCAGTTTTTATCACAGTTGCTCTGCAGCACAGCTTTAGGTCAGGCAT
GGTGATTCCTCCAGAAGTTCTTTTATCATTGAGAAGAGTTTTTGCTATAC
TAGGTTTTTTATTATTTCAGATTAATTTGCTAATTGCCCTTTCTAATTCT
TCGAATAATTGCACTGTCATTTTCATTTCCTATGCCTCCGACTCCGCCCA
TATACATTTGCACACACACTCTCCTTCTTATTTCTTTTTTCCCTTTTCTC
CTTTTTCTTTTTTTCCACCCTTCCCTTCTCCTTATCTCCCCCTCTCTTTT
TCTACCTAACCTCCTCCTCTTTTTCTTTTTTCCCCCTCTTTTCCCTTTTC
TTATTCCCTTTTCCCCTCCTTCTATCTCTTATCCCCTTCCTTCTTTTCTT
TTTTTATTTATATCCCACTTATATTCTACCATTTTACTATTCCCTCCTTT
TACTCTCCTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_d04.b1 MSMg01no465_d04.b1 CHROMAT_FILE:
MSMg01no465_d04.b1 PHD_FILE: MSMg01no465_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:13 2005
         (269 letters)



>mm_chr1_11776297_11776965
          Length = 669

 Score =  398 bits (206), Expect = e-115
 Identities = 237/250 (94%), Gaps = 6/250 (2%)
 Strand = Plus / Plus

                                                                       
Query: 19  cttcttcttgtgttctcagtagaggctcttagtagatcaaaggtggaagggcacatattt 78
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 219 cttcttcttgtgttctcagtagaggctctgagtagatcaaaggtggaagggcacatattt 278

                                                                       
Query: 79  gcactattgatttactgttcactgttcag---cagggctgggaaaatcctctgtctccct 135
           |||||||||||||||||||||||||||||   ||   |||||||||||||||||||||||
Sbjct: 279 gcactattgatttactgttcactgttcagtggca---ctgggaaaatcctctgtctccct 335

                                                                       
Query: 136 cacagatctgaaaagtggtccttgggaagatgaagaaaagcagctcaactgtaaaatctc 195
           ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 336 cacagatctgaaaagtggtccttgggaagatgaagaaaagcagcttaactatgaaagctc 395

                                                                       
Query: 196 attctttgtgagcaaagaggaccagggtgaatagggttgtaaagccaccatgtggctgct 255
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 396 attctttgtgagcaaagaggaccagggggaatagggttgtaaagccaccatgtggttgct 455

                     
Query: 256 gggaattgaa 265
           ||||||||||
Sbjct: 456 gggaattgaa 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)