BAC Information

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BAC

Clone NameMSMg01-465G23
Chromosome1 (Build37)
Map Location 74,810,245 - 74,968,390
singlet/doubletdoublet
Overlap geneWnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3
Downstream geneIhh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465G23.T7 (MSMg01no465_g23.b1)MSMg01-465G23.TJ (MSMg01no465_g23.g1)
ACCAG549616AG549617
length828757
length of high quality
(start - end)
337 (68 - 404)377 (64 - 440)
definitionCHROMAT_FILE: MSMg01no465_g23.b1 PHD_FILE: MSMg01no465_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:32 2005CHROMAT_FILE: MSMg01no465_g23.g1 PHD_FILE: MSMg01no465_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,810,245 - 74,810,581)(74,968,014 - 74,968,390)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAGCCGCGGAATTCCCGG
GAATACAAGAAAATGGTATAGGCATCCAAGATCTTGAGGGAAGTTGGGGT
TCAACAGGTCTGGCTGAGAAGTTAAGTACAGAGAGTATAAAAGGGGAATG
GGTGGGTCAGGGTGGAACCAAGAGCTACTTACAGGTCAGAACTTTTCCAG
GAGACAAAATGCAAGATAAATCTGGAAGACAAGCAAGAGCCAAACTGGAA
CGGGGCAGGGGGGTGCCAGGTTAAGCACGGGGTGTATCTGACAAACCAAG
CAGTGTGGATGACCGTTTCTTGGCAAGAAAGTTGTAGGATGGTGTTTGGG
CATCAGCATAGTTGGCCTGGGGTTTAACTCACTCTGTGTTTTTCTTCCTG
CTTTCCCCCACCCATTCCTATTATTGACCCCGCAAAGGTCTGTCTGTTTT
CTGCCTCTCTGAGGCTGACCCTATCTTGTCTTCTGTGAAACTGGTCGGGT
TTTCTGTCCTCTGTATGGAGTTTTCTTTCTGGTTTTCTCTGTTTTCCTTG
CCCCTCTTTTATTCTTTTCCCGTGTTATTGGCTCCTCTCTTCCTTTGGGT
CTCTTCTCACTTTTGTACCGACTCTTTTTTTCCCATCTTTGCTACTTTGC
TCTCCCGAGTCTATTAGTCTTGTTCCTCATCTCATTCTTTTTTTTTGTTT
CTTTTTCTTTTTTCTTCCTCTCTATACCCCGCCCCTTTCCATGCATCCTT
TCTTCACTCTCATTTTTTTCCTCCCCCTTACATCTCTTTATATACGCCAC
CCTTCCCTTCTTACCTCTCTATATTCTN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGCTGGCTGTGCCGTATGCAGAGATCTTGGCTCTC
CTTGGAGACAGCATCATCCAAACCTGGGTGGGCCCCAAATGTGTATCTAG
GGACGGAGAACTGAGGAAGGACGCCTTTCCCTCTTATTCTCCCCACCTCC
CAGACGTTCCCAGCAGTGTCTCCTGGAAAACCCTCCTACAGAAGCCTGTT
TTTGGTCAACAAAGGCTCCATGCTCATGACCTTCAGCCTGGCCCCCAATA
GCAGCTCGGACATCACCCTGAGGCCCTCCTCTGGCCTCATCAGTCCTGGA
GCCCACCAGGTCTTCCTTATAAGCACATACCCCAAGGGCACCTCATGGAG
GCAGCACATTTTCTACCTGAACTTCAACTTTTATCCCCAGTACCTCAAGG
TAGGAGGCAGGGGTAGAGGAACTGGGGCTTTACTGGGTCTTCAGGGCACC
CCGATTTGTCACTTTTTTTTTCTAACCCCTTTTTAGGGTCGGGGCCACCT
AATGGGTGATGGGAGGGGGCTTCATACACCCCCTATTTTAGTTTTTCTCT
ATCCTTTTGTCTTTTTTCTTGTTTTCGCCTCCCTCCTATTATTTCCTTTC
CTCTTTTTTTTTTTTCTTTTTTCTTCGTTCCCCCCCTCCTCAACCGCCCT
TCCCTTTCTATTTCTTATTACTCCCTCTCCCCACTCCCCTTTTTATTTCT
TCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_g23.b1 MSMg01no465_g23.b1 CHROMAT_FILE:
MSMg01no465_g23.b1 PHD_FILE: MSMg01no465_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:32 2005
         (337 letters)



>mm_chr1_74810045_74810781
          Length = 737

 Score =  590 bits (305), Expect = e-173
 Identities = 329/337 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggcatccaagatcttgagggaagttggggttcaacaggtctggctgagaagttaagt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 201 ataggcatccaagatcttgagggaagttggggttcaacagggctggccgataagttaagt 260

                                                                       
Query: 61  acagagagtataaaaggggaatgggtgggtcagggtggaaccaagagctacttacaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagagagtataaaaggggaatgggtgggtcagggtggaaccaagagctacttacaggtc 320

                                                                       
Query: 121 agaacttttccaggagacaaaatgcaagataaatctggaagacaagcaagagccaaactg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacttttccaggagacaaaacgcaagataaatctggaagacaagcaagagccaaactg 380

                                                                       
Query: 181 gaacggggcaggggggtgccaggttaagcacggggtgtatctgacaaaccaagcagtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gaacggggcaggggggtgccaggttaagcacggggtgtatctgacaaaccaagcagtgtc 440

                                                                       
Query: 241 gatgaccgtttcttggcaagaaagttgtaggatggtgtttgggcatcagcatagttggcc 300
           |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 441 gatgaccgtttcatggcaagaaagttgtaggatggtgtttgggcatcaacacagttggcc 500

                                                
Query: 301 tggggtttaactcactctgtgtttttcttcctgcttt 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggggtttaactcactctgtgtttttcttcctgcttt 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no465_g23.g1 MSMg01no465_g23.g1 CHROMAT_FILE:
MSMg01no465_g23.g1 PHD_FILE: MSMg01no465_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:32 2005
         (377 letters)



>mm_chr1_74967814_74968590
          Length = 777

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctggctgtgccgtatgcagagatcttggctctccttggagacagcatcatccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttgctggctgtgccgtatgcagagatcttggctctccttggagacagcatcatccaaac 518

                                                                       
Query: 61  ctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgcctttccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgcctttccctc 458

                                                                       
Query: 121 ttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccctcctacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccctcctacagaa 398

                                                                       
Query: 181 gcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggcccccaatagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggcccccaatagca 338

                                                                       
Query: 241 gctcggacatcaccctgaggccctcctctggcctcatcagtcctggagcccaccaggtct 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 gctcggacatcaccctgaggccctcctctggcctcatcggtcctggagcccaccaggtct 278

                                                                       
Query: 301 tccttataagcacataccccaagggcacctcatggaggcagcacattttctacctgaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tccttataagcacataccccaagggcacctcatggaggcagcacattttctacctgaact 218

                            
Query: 361 tcaacttttatccccag 377
           |||||||||||||||||
Sbjct: 217 tcaacttttatccccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)