BAC Information

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BAC

Clone NameMSMg01-465L23
Chromosome1 (Build37)
Map Location 7,084,629 - 7,084,873
singlet/doubletsinglet
Overlap genePcmtd1
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
Downstream geneLOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465L23.T7 (MSMg01no465_l23.b1)MSMg01-465L23.TJ (MSMg01no465_l23.g1)
ACCAG549855AG549856
length790764
length of high quality
(start - end)
436 (37 - 472)245 (65 - 309)
definitionCHROMAT_FILE: MSMg01no465_l23.b1 PHD_FILE: MSMg01no465_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:58 2005CHROMAT_FILE: MSMg01no465_l23.g1 PHD_FILE: MSMg01no465_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCTTTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
AGGATAACAAACAGTTGTGCCAGCACCAATTGTTTGAAAATGCTGTCCTT
TCTTCCACTTGGATGGTTTTATCTCCCTTGTCGAAGATCAAGTGACCATA
AGTGTTGGGGGTTCATTTCTGGGGGCTCCATTCTATTTCACTGGGGTAAC
TTGGTTGGGGCAAAAACACGAACATGGCGGTTTTTTTCACAATTGTTCCT
GGAGAAAAAGTTTAGTTCCGGCTTTCGTTTTTCCCTCCCATTTTTTTTTC
CTTCTAACAAAATCTCTGTGTTCCTAAGAATTCTGTTTTAATTAAAATTT
TTATAAACGTGTCTCCTCCTTCTTTCAAAATAACCCCCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGGCAAGGAGCTGCAAAAGCTTTCCACAATAGATA
ATGTGGATTCTTTTCAGATTATTAGGAAATGGTAGATTGCTCATCTGAAA
ACTAATTTACTTGAGTGCTTGGTTCCTTGATATACTGAGTTTGTAAAAAA
ATCAGTGTTTTGGTATGTGAATTTTCCATGCTGTCAAGTTGACCCAGCTT
CCTAATGAACTGCAGAATTCTAATGAACCACTTCACAGTTTCTTCTGTGT
ATGCAGAGATAGATTAGATTTAGCAAAATCACGTGTGTTCTTTTGTTTTT
GTTTTGCTATATTTGGAAGTTGTAATCATCTAATCATCTGTATGCTCACA
CATATTGTATGCTACATCAGGTTCTGAGTTCAGTCCCTATATTCACTGTT
TCCACCGTGAATATCTATAGAACAATCATAAGAAAACATAAAAGCCCATC
CTAATGAACTTTTACTTAAATCTATTAGCTTGACTTCCACGTGATTTCAA
TTTCATATTCTTGCTTTTACCCACACATCCATTCCCCTTTTCGTTTTTTT
ACATTTCCTCCCCTAACTAATGTTTTTTTCCCCTTTATACCCGCGCTCCT
CTATCCCTTTTTTTCTTTTGTTTTTTTCATTTCCTATCCTTACTCCTATA
TTTTTTTTTGCCCTCTCACCAGTATCCCCCACCCATCTTCTCCCTTTTTT
TTTCCCCCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_l23.g1 MSMg01no465_l23.g1 CHROMAT_FILE:
MSMg01no465_l23.g1 PHD_FILE: MSMg01no465_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:58 2005
         (245 letters)



>mm_chr1_7084429_7085073
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcaaggagctgcaaaagctttccacaatagataatgtggattcttttcagattatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcaaggagctgcaaaagctttccacaatagataatgtggattcttttcagattatta 260

                                                                       
Query: 61  ggaaatggtagattgctcatctgaaaactaatttacttgagtgcttggttccttgatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggaaatggtagattgctcatctgaaaactaatttacttgagtgcttggttccttggtata 320

                                                                       
Query: 121 ctgagtttgtaaaaaaatcagtgttttggtatgtgaattttccatgctgtcaagttgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagtttgtaaaaaaatcagtgttttggtatgtgaattttccatgctgtcaagttgacc 380

                                                                       
Query: 181 cagcttcctaatgaactgcagaattctaatgaaccacttcacagtttcttctgtgtatgc 240
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cagcttcctaatgaactgcagaactctcatgaaccacttcacagtttcttctgtgtatgc 440

                
Query: 241 agaga 245
           |||||
Sbjct: 441 agaga 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)