BAC Information

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BAC

Clone NameMSMg01-465N22
Chromosome1 (Build37)
Map Location 22,313,008 - 22,313,408
singlet/doubletsinglet
Overlap geneRims1
Upstream geneLOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612, LOC100040338
Downstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465N22.T7 (MSMg01no465_n22.b1)MSMg01-465N22.TJ (MSMg01no465_n22.g1)
ACCAG549949AG549950
length763755
length of high quality
(start - end)		402 (43 - 444)401 (72 - 472)
definitionCHROMAT_FILE: MSMg01no465_n22.b1 PHD_FILE: MSMg01no465_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:08 2005CHROMAT_FILE: MSMg01no465_n22.g1 PHD_FILE: MSMg01no465_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTGCAATTTTTGAGGTTGATTATGTATGCTATCATACCATCTTC
AAATAGTGATACTTTGACTTCTTCCTTTCCAATTTGTATCCTCTTGATCT
CCTTTTGCTTTCTAATTGTTCTGGCTAGAAATTCAAATAATGTATTGAAT
AGATAGGGAGAGAGTGGGCTACCTTTCCTTGTCCCAGATTTTAGTGGGAA
TTCTTCAAGTTTCTCTTCATTTAATTTGATGTTGGCTATTGGTTTGTTAT
ATATTTCTTTTATTATGTTTAGATATGTACCATGAATTCCTGATCTCTCT
AAGATTTTTAAAATTAAGGTGTGTTTTAAAATTAAGGGGTGCCCTTTAGT
TAGTTAGGCTAAAGGTATTGATTTTCTCAAAGAACAAGCTCTTGGTTTTG
CTGATTCTTTGTGTGTGCTCTGTTTCTAGTTGGTTGATTTCCACATTGAA
ATTGACTATTTCCTGCTGTCCACTCCCCTTGGGATGCATACTCTCTTCTG
TTCTATAAACTTCCAGGGGACTGTTAAATCGTCTTCACTGACACTCCCCC
CACCTTTTTTTTTTTCCCTTCCCCCCCCCCAACTCTTCCCTTTTCCCTGG
GATTATTTTTTTCCCTCTTCTTGTTTTCGCATTCCTCCATCTAACCCTTT
TTTTTTTCTTCCCTTTCTCTCCTTTTTCTTTTCTATCTTTCTCCCCCTCT
TTACCTTTTTCTT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGAGTTGCCCACACTTGAGTGGGCGTTC
GTTAGAACTGAGGAGTCTTGAGAGACGGAGGTGACTAGGATGCTATCATG
GTGTAAAGTGCATTTGGCTCTCTGTGTCTCTTCTACAGCTCTCTTGCTCC
GTTGCCTTCCGCCATTATCCTTTTCCACAGAGATGCCCACTTCATATCAC
TCTCCTGCTTGTCTTCATTTATTTAACCATACTAAAGGTGTATGAAGGGC
TCCCTTGCCATTTCTCCCATTCACTAGTTTGGAAATCAGGTACAGAGGCT
ACATCTCTGTCATGAGCAGAGCCCCCTCACAAACACAGGCTGCTGAGCTG
TGGTGCCTGCCATGATTCCAGCTGCTCAAGGGACAGGGTTCTCACTAAGG
AGTATCCTGTGCCAGCTCTTAAGTTGNAACTATCATTACATTTACCTAGG
ACACNAGGGCAATTTTTAATTTATCTCATATGGCCGCGGGAGTTTAGAAA
ATTTCCATAAACTCCCCGGCTACTTCTTTGAAGAAAAATTAACTGGGTAT
AACTTAATATTGGAAACCTCCCACATCCTTTGGTTTAAAAACATTTTCCA
CTTTCTTTTTTCCTTACCCTTATTCGTTGGTAACCATTTCCTCTTTTGTT
TTTCCTTTTATACAGTACTTTTCTCTTCTTTAACTTTCCACACTTCCTAC
TTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_n22.g1 MSMg01no465_n22.g1 CHROMAT_FILE:
MSMg01no465_n22.g1 PHD_FILE: MSMg01no465_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:08 2005
         (401 letters)



>mm_chr1_22312808_22313608
          Length = 801

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagttgcccacacttgagtgggcgttcgttagaactgaggagtcttgagagacggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgagttgcccacacttgagtgggcgttcgttagaactgaggagtcttgagagacggagg 542

                                                                       
Query: 61  tgactaggatgctatcatggtgtaaagtgcatttggctctctgtgtctcttctacagctc 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 541 tgactaggatgctgtcatggtgtaaagtgcatttggctctctgtgtctcttctacaaccc 482

                                                                       
Query: 121 tcttgctccgttgccttccgccattatccttttccacagagatgcccacttcatatcact 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcttgctccattgccttccgccattatccttttccacagagatgcccacttcatatcact 422

                                                                       
Query: 181 ctcctgcttgtcttcatttatttaaccatactaaaggtgtatgaagggctcccttgccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctcctgcttgtcttcatttatttaaccatactaaaggtgtatgaagggctcccttgccat 362

                                                                       
Query: 241 ttctcccattcactagtttggaaatcaggtacagaggctacatctctgtcatgagcagag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 ttctcccattcactagtttggaaatcaggtacagaggctacatctctgtcatgagctgag 302

                                                                       
Query: 301 ccccctcacaaacacaggctgctgagctgtggtgcctgccatgattccagctgctcaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccccctcacaaacacaggctgctgagctgtggtgcctgccatgattccagctgctcaagg 242

                                                    
Query: 361 gacagggttctcactaaggagtatcctgtgccagctcttaa 401
           |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 gacagggttctcactaaggagtatcctgtgccggctcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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