Query= MSMg01no466_a09.b1 MSMg01no466_a09.b1 CHROMAT_FILE:
MSMg01no466_a09.b1 PHD_FILE: MSMg01no466_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:21 2005
(272 letters)
>mm_chr1_167617824_167618496
Length = 673
Score = 484 bits (250), Expect = e-141
Identities = 268/274 (97%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 1 tgtatgtgtccctccccagcccccatcttcctcagaggagtagagcctagatgtttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtatgtgtccctccccagcccccatcttcctcagaggagtagagcctagatgtttcctg 414
Query: 61 tcacccagcca-cccctaatgccttttcccagaggacagcctagctgagttaccaggccc 119
||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 413 tcacccagccatcccc-aatgccttttcccagaggacagcctagctgggttaccaggccc 355
Query: 120 aagagaaagaaactctcctacccctggcttccacctccctcccagtttttcatccccatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagagaaagaaactctcctacccctggcttccacctccctcccagtttttcatccccatg 295
Query: 180 gggccaccattcctttcttatca-ctggaccaaccggaaagaatttacgggtgaaagaac 238
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 294 gggccaccattcctttcttatcatctggaccaaccagaaagaatttaagggtgaaagaac 235
Query: 239 tgaacccctttaaagttgagccctctctatagcc 272
||||||||||||||||||||||||||||||||||
Sbjct: 234 tgaacccctttaaagttgagccctctctatagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space: 174632
Effective search space used: 174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no466_a09.g1 MSMg01no466_a09.g1 CHROMAT_FILE:
MSMg01no466_a09.g1 PHD_FILE: MSMg01no466_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:21 2005
(472 letters)
>mm_chr1_167420110_167420981
Length = 872
Score = 905 bits (468), Expect = 0.0
Identities = 471/472 (99%)
Strand = Plus / Plus
Query: 1 caggacagccaaggctacacagagaaaccctgtcttgaaaaaaagaactccatctcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaggctacacagagaaaccctgtcttgaaaaaaagaactccatctcaaaa 260
Query: 61 aagtgttgaggtcatcttcagctacataatgagtttgcaatatccagccttggccacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgttgaggtcatcttcagctacataatgagtttgcaatatccagccttggccacatg 320
Query: 121 agaacctgtcaaaataattttaataaaacgctgaaggggctgaagttcagcagttaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacctgtcaaaataattttaataaaacgctgaaggggctgaagttcagcagttaacag 380
Query: 181 cacttgctattcttgcaggagacttgggttcaattcccagctcctacatgacaaaactgt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttgctattcttgcagaagacttgggttcaattcccagctcctacatgacaaaactgt 440
Query: 241 tattaactagttccagatctgacatactctttggcctctgtggacaccaggcagcaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattaactagttccagatctgacatactctttggcctctgtggacaccaggcagcaggca 500
Query: 301 catgatgtacttacaggcaaaatactcagacataaaaataaatctttaaagacgtggctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgatgtacttacaggcaaaatactcagacataaaaataaatctttaaagacgtggctt 560
Query: 361 gtggaagcaagcagctcttcattttctagttctagatttgcagcatcaaggtcatgggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggaagcaagcagctcttcattttctagttctagatttgcagcatcaaggtcatgggag 620
Query: 421 gaaaaaacatggtagactattcatgatgaggagggtgacaagaatgagacac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaaaacatggtagactattcatgatgaggagggtgacaagaatgagacac 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
