CCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCACTTGGTATACTGGATCCTTTTACGGCAAAGCTTTCATTG
CTTCAACATAAGGAAGACCCCGAACCTGGAAAATGGCACTGCTTATATAG
CCTGCAGCGTGACGTTTCAGTACCTGATGTGGCGTGACAGCACCTGATTA
GTTGCTCGCCCATCACCCCATTACTAAGCCCCAAGATGGGAAGTGATTGG
GTTTGAATTCACTCTTGTACTTGTGCATAAGTCTTGTTTACTAGTTAGGC
GCAGTGGAAGTCAGCACCATCTTATAATGGCAATTGCTCACAGCACGGCT
CTCCACAGTATATTAATAAGATGTATATACAGTACATGTATATAATGCAG
TTTACACAGATCTTCTCTATGTCAGTTACTTACTAGTTAATCTTAGTTAC
ATTTTTAGTTACTAAGTTTTACTTCCTAGTTTTTCAGTGAGTTGGGAGGT
CACAACCAAATCCAGAGCTGAGGAAGATGGATAATCTCAATATCAAACTT
GCTCTGGACAATCTTTTCTCTCACACTTCTAAAGTTGGTGTTATAGGCTC
AATTCTATGCTGCACATGTATGTGGGTTCTGTACACTCAAATCGAATTTT
CAGGCTGATAGGCTTAAGTTTTAATGTTCCAGCACTGCCAAAGCTCCTTT
ATAACTCTTGTACTTTCTCTTTCCTGTTTTC

CCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTC
TCGGGGTGTAATAGTGGGGTGATGGGCAAGCAACGAATCGGGAGCTGTCA
TGCCATATCAGGTGCTGAAACGTCACGCTGTGGGTTATAAAAGCAGCGCC
ATTTTCCAGGTTCGGAATCTTCCTAAGAAGCAAGCAATAAAGCTCTTGCC
GTGGAAGATTCTGGTTTGTTTCGTCTTTCTTGCTGGTCGAGCAGGATGCA
ATAGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCC
AATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGACTTACAG
AACCTTTGCAATTTTATGAGGTGCCATTTGTTGATTCTTGATCTTACAGT
ACAAGCCATTGATGCTTTGTTTAGGAATTTTTCCCCTATGCCAGTATCTT
TGAGGCTTTCCACCCCACTTTCTCCTCTATAAGATTCTGCGTCTCTGGCT
TTATGTACAGTTTCCTAATCCTCTTATACATGACAACTTGTACTCAGTAT
ATAACTTGTCTTCTCCTCCTATATTCTTTCTACATGAATCTTCTTCCGCT
TAAATTTCTTTTTACTTTTGGTCCGTACCTGCCCGCTTTTTTTTTCTAAC
CGTTCACGCTTATTACCTACCCCAAAATCCATACTTACCAACCTATACTC
TCTCACCATTTCTCTATGTCCAACTTCCCN

Query= MSMg01no466_b01.b1 MSMg01no466_b01.b1 CHROMAT_FILE:
MSMg01no466_b01.b1 PHD_FILE: MSMg01no466_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:24 2005
         (585 letters)



>mm_chr1_27860451_27861435
          Length = 985

 Score = 1069 bits (553), Expect = 0.0
 Identities = 574/581 (98%), Gaps = 2/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcacttggtata-ctggatccttttacggcaaagctttcattgcttcaacataagg 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacttgg-acaactggatccttttacggcaaagctttcattgcttcaacataagg 264

                                                                       
Query: 65  aagaccccgaacctggaaaatggcactgcttatatagcctgcagcgtgacgtttcagtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaccccgaacctggaaaatggcactgcttatatagcctgcagcgtgacgtttcagtac 324

                                                                       
Query: 125 ctgatgtggcgtgacagcacctgattagttgctcgcccatcaccccattactaagcccca 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 325 ctgatgtggcgtgacagcacctgattagttgcttgcccatcaccccattactacgcccca 384

                                                                       
Query: 185 agatgggaagtgattgggtttgaattcactcttgtacttgtgcataagtcttgtttacta 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatgggcagtgattgggtttgaattcactcttgtacttgtgcataagtcttgtttacta 444

                                                                       
Query: 245 gttaggcgcagtggaagtcagcaccatcttataatggcaattgctcacagcacggctctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttaggcgcagtggaagtcagcaccatcttataatggcaattgctcacagcacggctctc 504

                                                                       
Query: 305 cacagtatattaataagatgtatatacagtacatgtatataatgcagtttacacagatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacagtatattaataagatgtatatacagtacatgtatataatgcagtttacacagatct 564

                                                                       
Query: 365 tctctatgtcagttacttactagttaatcttagttacatttttagttactaagttttact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctctatgtcagttacttactagttaatcttagttacatttttagttactaagttttact 624

                                                                       
Query: 425 tcctagtttttcagtgagttgggaggtcacaaccaaatccagagctgaggaagatggata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctagtttttcagtgagttgggaggtcacaaccaaatccagagctgaggaagatggata 684

                                                                       
Query: 485 atctcaatatcaaacttgctctggacaatcttttctctcacacttctaaagttggtgtta 544
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atctcaatagcaaacttgctctggacaatcttttctctcacacttctaaagttggtgtta 744

                                                    
Query: 545 taggctcaattctatgctgcacatgtatgtgggttctgtac 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taggctcaattctatgctgcacatgtatgtgggttctgtac 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)