BAC Information

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BAC

Clone NameMSMg01-466B22
Chromosome1 (Build37)
Map Location 156,377,124 - 156,377,504
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466B22.T7 (MSMg01no466_b22.b1)MSMg01-466B22.TJ (MSMg01no466_b22.g1)
ACCAG550140AG550141
length773838
length of high quality
(start - end)
381 (81 - 461)227 (81 - 307)
definitionCHROMAT_FILE: MSMg01no466_b22.b1 PHD_FILE: MSMg01no466_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:29 2005CHROMAT_FILE: MSMg01no466_b22.g1 PHD_FILE: MSMg01no466_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATTTCTAATATTTGTGTCGCTTATACGACTCACTAATTTCCANAGAAA
CGCGGAANNCNGCACCATATCCCATCAACCTCAGTCCTTGCAAATATTTC
AAGATATTCGCTGCCTAAGAAAAACCTGCCCAGGCCACCTCACAAGGGCC
CATTCTGAATATCCTGTCTTCCTCCCTTATAAATTCTGATTTCCCTTGCC
TACCTCTTGCTTTCTAGTCTCTAAATGGCCTCCTGAAACCAGAGAGTCAA
CTTCAGAATGTTGGCTTCATACATTTGGGCCCCTCCTGATCATGGGTTTG
TCTTGTCAACCCCACGCCCTTTGTATTTCTCAGTCAAGCATGTTCTTTGC
TCGGCCATTGACAGGTCAGGATGTGAACAGACTTTTCCAGGACCCTTGAC
CCTCAAGTACTGTCCTGAAAAAGCATTGTGAATGTGAACTCAGCTTCTTG
GTCCCACCTAGATCAAGTCATCCCTAAGAACACAGAAGCAACCTCCTGGT
AGAGGATACCTTTCCCCCTGTTTCTCTGCTTAACAGATTTCCTTTTTCTG
TGATCTGAGTGATCTTTCACATATTATGTCTTATTCCCCCCCCATCTGTT
CAGTATCATCAAGCCCCCAGTTTGTGCTTTTCCCTTGACAATATGCTGTT
TCCTTTTCCTCTTTTCCCCAAAACACACCAGGTTTCCTAATTCCATGTTA
TTTTATGTCTTTTCTCCTTTTCTACCCTTTTTTTTTCCTCCTTCTTGTAA
CCTCTTTTTTTTTATTTCTTCAT
CAACCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGC
CTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA
GGCATGCGCCACCACTGCCCAGCGCCCAGTGGGATATCTTTTTCCAGTGT
AATTCTTTATTCAGGAAAGAGACATGATAATGACGTTTGTTTGTTTGTTT
GTTTTTTGGCTAACTTTTATTCTGTGTTTCGTGTTTTCTGAAACTTTTCT
TGATGCGGAGGGCGGGCAATTTTTTTTTCTTCCTTTCATAACCCTCTTGA
CCCCATTATCCCTTCCTGTCTTCGACATATTGATACCCTTCCTTTTGACC
CTTTTTGATTCTGATTCTATTCTTCTTCCCCCCCTACTTCTCCTTTTTTC
TTTCTCCCCCCCTCCCCTCCAATTTTTACTTTCCCTCCCTTTTTCCCATT
TTCTTTCTCTTTTTTTATCACTCTTTTATTCTCTTATCTCATCTCTCTCT
TATCCCCTATATTCCTTTCCCTCCATCTTTTATAATTCCCATATATATTT
CCCCCCTTATCTTTTCTCTTATATTTCTTCTCTCTATTAATTTGCCTTAT
TTTCTTATTTTATTTCTATATCTTTCATTATCAATTATTCATTAATCCCC
TATCCTATTTCATATATTCTGCACTCCACATTCCCATAACTGCATTTTCT
CCTCTCCCCTCCCTCCTCTTATTTCCTTCCACCCTCCTCTCATTAATTCT
TATCTTACTCCTCCTCCTCTCTCTCCCCCTTCCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_b22.b1 MSMg01no466_b22.b1 CHROMAT_FILE:
MSMg01no466_b22.b1 PHD_FILE: MSMg01no466_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:29 2005
         (381 letters)



>mm_chr1_156376924_156377704
          Length = 781

 Score =  708 bits (366), Expect = 0.0
 Identities = 378/382 (98%), Gaps = 2/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtccttgcaaatatttcaagatattcgctgcctaagaaaaacctgcccaggccacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtccttgcaaatatttcaagatattcgctgcctaagaaaaacctgcccaggccacct 260

                                                                       
Query: 61  cacaagggcccattctgaatatcctgtcttcctcccttataaattctgatttcccttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaagggcccattctgaatatcctgtcttcctcccttataaattctgatttcccttgcc 320

                                                                       
Query: 121 tacctcttgctttctagtctctaaatggcctcctgaaaccagagagtcaacttcagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctcttgctttctagtctctaaatggcctcctgaaaccagagagtcaacttcagaatg 380

                                                                       
Query: 181 ttggcttcatacatttgggcccctcctgatcatgggtttgtcttgtcaaccccacgccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggcttcatacatttgggcccctcctgatcatgggtttgtcttgtcaaccccacgccct 440

                                                                       
Query: 241 ttgtat-ttctcagtcaagcatgttctttgctcggccattgacaggtcaggatgtgaaca 299
           ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttg-agcttctcagtcaagcatgttctttgctcggccattgacaggtcaggatgtgaaca 499

                                                                       
Query: 300 gacttttccaggacccttgaccctcaagtactgtcctgaaaaagcattgtgaatgtgaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacttttccaggacccttgaccctcaagtactgtcctgaaaaagcattgtgaatgtgaac 559

                                 
Query: 360 tcagcttcttggtcccacctag 381
           |||||||||||| |||||||||
Sbjct: 560 tcagcttcttggccccacctag 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)