BAC Information

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BAC

Clone NameMSMg01-466C03
Chromosome1 (Build37)
Map Location 63,117,210 - 63,117,650
singlet/doubletsinglet
Overlap geneA430093A21Rik
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneNdufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C03.T7 (MSMg01no466_c03.b1)MSMg01-466C03.TJ (MSMg01no466_c03.g1)
ACCAG550150AG550151
length759759
length of high quality
(start - end)
483 (76 - 558)488 (73 - 560)
definitionCHROMAT_FILE: MSMg01no466_c03.b1 PHD_FILE: MSMg01no466_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005CHROMAT_FILE: MSMg01no466_c03.g1 PHD_FILE: MSMg01no466_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAGAGAGAGCG
CGGAAGTCCAGGTTTGCCAAAACTACAAAGTGAGACCCTGTCTCAGAACA
AACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAAAGAATATT
AAATTTCTTTTCTTTTGTTGGTGCTGGGATTGATGCTAAATACCATGAGC
ATACAGACAAATCGTCAATGACCAACCCACAACTTCATCTCATCTTGACA
ATATATTTCCCACTACCCCAAGGAAAGATGTTTATACTATCAATGTTAGC
CTACAAAAAATGTACAATTTTTCATAAGGAAAGCTGTATTATATTAGCAG
CTATGCCCCAAATTGCTTGGTCTAGATTTTATACCACATGGTACTCAATA
TAAAAAAAAAAATAATTTCACTGAACACTTTAATAATCTGCTGAGCTATC
TACCAAGCCCAGTGTGCAATATATTTCCTTGTTTCTTTCTTTTCTTTTAT
TAAAACAAACAAAATAGTCTCATGTAACTCAGGCTGGTCTTAAGTAAGCT
CGCTATGTAGCTAATAATGACTGAATTCGCCAGGCAGTGGTGGTACATGC
CTTTAACCCCAGCACTCAGGAGGCAGATGCAGGCAGAATTCTGAATTCTA
GTCCAGCCTGATTTATATATTGAGTCTCCATACATTTATGTCTACATATA
AAAAACCCTGTCTTGTATTACCCATACAATACCCTAATTACTTTTAAAGC
TTTGATTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTGCTGGCAGGAATTAGAACATGACC
CGCTTGTACTATTACATTGTCACTGGCTTTCTGTTTTCTAAATCCTTCAC
TGCCAAAGCTTGGCTATCCTGCTTCTTGCTCTGTAGATTGACCTTGAATG
CAGAGATCAGCATGCCTGTCTCATGGGATTAAAGGAGTGTACCACCATGC
CTGGATATAAATTCAGCTGGGTAGGATCTTGCCCCAAGGTCCCACTCCCT
TAATCTGTTATATCCTAGAACACAGGATTTTGCTCCATTTCACTTCCTGG
TATGCCATTAATACTCAAACCATATATTTTATATTTTGCCTTTCTAAGCT
TGCTATGCTTGTTCAAACTTCTCTTTGAGAGACTTAACCAAAGAACAAAG
TCTCTGCTGGGCTTTTTTGAAACTTCCTTTGTCAATGCAATTAATGCAAT
TAATCCAATCCAATTAACCTTAGCCTCAGACAGACTTTTCAGACAAGGGC
AAAAAGTAGCCACATTCTTCACCAAAATTCCACAAAAACAGTCTTTATGC
CACATACTGAAAGTCTTCTCCTTTGAAATCTCTTTGGCCAAGTCAACACA
GTTCAAATTACTTCCAGCAAACAAGCCTTCCATATTTCCAACTAGTATGA
CCCCATTAAACCCCATTTTAAAGCATTCTCCTGAAGCTCCCAATTCCAAA
GGCCCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c03.b1 MSMg01no466_c03.b1 CHROMAT_FILE:
MSMg01no466_c03.b1 PHD_FILE: MSMg01no466_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:30 2005
         (483 letters)



>mm_chr1_63116969_63117851
          Length = 883

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%), Gaps = 1/442 (0%)
 Strand = Plus / Plus

                                                                       
Query: 42  aacaaacaaacaaacaaacaaacaaaagaatattaaatttcttttcttttgttggtgctg 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacaaacaaacaaacaaacaaacaaaagaatattaaatttcttttcttttgttggtgctg 301

                                                                       
Query: 102 ggattgatgctaaataccatgagcatacagacaaatcgtcaatgaccaacccacaacttc 161
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 302 ggattgatgctaaataccatgagcattcagacaaatcgtcaatgaccaacccacaacttc 361

                                                                       
Query: 162 atctcatcttgacaatatatttcccactaccccaaggaaagatgtttatactatcaatgt 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atctcatcttgacaatatatttcccactaccccaaggaaagatgtttatactatcaatgt 421

                                                                       
Query: 222 tagcctacaaaaaatgtacaatttttcataaggaaagctgtattatattagcagctatgc 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagcctacaaaaaatgtacaatttttcataaggaaagctgtattatattagcagctatgc 481

                                                                       
Query: 282 cccaaattgcttggtctagattttataccacatggtactcaatataaaaaaaaaaataat 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 482 cccaaattgcttggtctagattttataccacatggtactcaatataaaaaaaaaa-taat 540

                                                                       
Query: 342 ttcactgaacactttaataatctgctgagctatctaccaagcccagtgtgcaatatattt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcactgaacactttaataatctgctgagctatctaccaagcccagtgtgcaatatattt 600

                                                                       
Query: 402 ccttgtttctttcttttcttttattaaaacaaacaaaatagtctcatgtaactcaggctg 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccttgtttctttcttttcttttattaaaacaaacaaaatagtctcatgtaactcaggctg 660

                                 
Query: 462 gtcttaagtaagctcgctatgt 483
           ||||||||||||||||||||||
Sbjct: 661 gtcttaagtaagctcgctatgt 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)