BAC Information

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BAC

Clone NameMSMg01-466E02
Chromosome1 (Build37)
Map Location 190,616,057 - 190,616,487
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466E02.T7 (MSMg01no466_e02.b1)MSMg01-466E02.TJ (MSMg01no466_e02.g1)
ACCAG550244AG550245
length779806
length of high quality
(start - end)
434 (52 - 485)230 (81 - 310)
definitionCHROMAT_FILE: MSMg01no466_e02.b1 PHD_FILE: MSMg01no466_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:40 2005CHROMAT_FILE: MSMg01no466_e02.g1 PHD_FILE: MSMg01no466_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCATTGTTTTGCCGTTTAGTTTTCTTTAATAAATGTGAGTTT
TTTCCCTCCCTTTAAGGGTCATGTTGCCCGAGACCATGCATGCTTTTCCC
TCTCCATTGTCCTTCGTCTGTTACCTCTGTGTCTGTGTGGTCGCTCTGAC
TCCATCCAGAGCTGCAGAAAGTGGGAAGTGGAAATGGAGTCTGGCATCTT
TGCCTCCTCTGATCTTAGAGGGCCTCCCAGTCTGTCCACCGAGAGAGGGC
TGTTAGTCTGGAGTTCTTCATACTCACCCCATATGCTGAGGCCATTTCCA
TGCATTCCTTCCTTGTTGAGGACAGTGAGAAAGGAAAAGCTTTCTTCTGT
CCTTTTCAACATCGGCTGAGGACAAGTCCCCACCTTCCCCTTACTCTGCT
GCTAGGCTAATGTTGTGTTACATTTATTAATTTTGTTCTGCTAACTTTTT
TTTTCCTTAACGTCTCTTTACATTTGCCGTGATTTCCACCGTTCTTCCAT
CCTTTCCCTCCCTTCCTTATCTCTCTTTCTCTTCTTTCTTTCCCCTCTCC
TCCTTCTCTCTTTTCCTTTTCTTTTCTTAACTACATACCCCTTCTTCATT
TTACCACTCTCCCTCTGTTCATTCTCCATTATTCCTTTCTTTTGACTTCC
CAACCTACTCTCCCGTTCCCCCCCTATTTCTCCCCACTATTTTATGTCCA
CTTTGTCTGACTCTCCTCTCTTATTTTCC
CTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTGGGAGACAGCTTA
GTGATACTAGCACATTAAGATGAAAATGGACCAAGGAAACTTACAAGGCT
TATAGTGACCTAATATTTGCATCTTAAGAATTATAGAAAGTGAAGAAAAG
GTGCTGACAAAACTCATAAAATAATGGCTGAAAATTCCCCAAGAGCTGGT
GGGTGGGAAGGAGAGCTGTATGTAATTTCTGGATAGGACAGGGCTGCTGC
ACAGATCAGCCCACAACAACTATGTTTATATGCACAAGACTAAGCCAGTC
AAAATTCCAGCGTGTGTCCCTCCTATCACAAGAGCTATTGGCCGCTGCCG
GCTGCTGAGAGAGGAAAATATGGTCTTCTTTGGTTTATGACTCCACTGTA
TACTTTCTCATGCTCCCCTCCCATGTTCTCCGCACTCTCATGCACCCCCC
CCTTTATTTTACACCGCACTTGCCTTTATCCCCCATCTTATCTACTTTTC
TTCTTCCCCACCCCTATCTATTTCCGACTACTTTTCTCTCCCCCCGTATC
TTCCCTCTGTTCTCTTTTTTTTCTTTACCTGTCCTCTTCAGCCCTCCCGT
ATCCCCACCACTCCGATAGAATACTCCGACACCTCATCCTTCTCTTTAAT
TCTACAATTCATTTTCACCCCTCTCTCATCTACCTCATATCCATCCCCAT
TATCTTCTCCCCTCTCTCCCCGCTCATCACAACCTCCCGACGCAACAATC
TACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_e02.b1 MSMg01no466_e02.b1 CHROMAT_FILE:
MSMg01no466_e02.b1 PHD_FILE: MSMg01no466_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:40 2005
         (434 letters)



>mm_chr1_190615854_190616687
          Length = 834

 Score =  687 bits (355), Expect = 0.0
 Identities = 413/433 (95%), Gaps = 4/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcattgttttgccgtttagttttctttaataaatgtgag--ttttttccctccctt 61
           |||||||||||| ||  |||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 204 gaattcattgttctggtgtttagttttctttaataaatgtggggtttttttccctccctt 263

                                                                       
Query: 62  taagggtcatgttgcccgagaccatgcatgcttttccctctccattgtccttcgtctgtt 121
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagggtcattttgcc-gagaccatgcatgcttttccctctccattgtccttcgtctgtt 322

                                                                       
Query: 122 acctctgtgtctgtgtggtcgctctgactccatccagagctgcagaaagtgggaagtgga 181
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 acctctgtgtctgcgtggtcgctctgactccatccagagctgcagaaagtgg-aagtgga 381

                                                                       
Query: 182 aatggagtctggcatctttgcctcctctgatcttagagggcctcccagtctgtccaccga 241
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||
Sbjct: 382 aatggagtctggcatctttgcctcctccaatcttagagggcctcccagtctgtccactga 441

                                                                       
Query: 242 gagagggctgttagtctggagttcttcatactcaccccatatgctgaggccatttccatg 301
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 gagagggctgttagtctggggttcttcatactcaccccatgtgctgaggccatttccatg 501

                                                                       
Query: 302 cattccttccttgttgaggacagtgagaaaggaaaagctttcttctgtccttttcaacat 361
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cagtccttccttgttgaggacagtgagaaaggaaaagctttcttctgtccttttcaacat 561

                                                                       
Query: 362 cggctgaggacaagtccccaccttccccttactctgctgctaggctaatgttgtgttaca 421
           ||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 562 cggctgaagacaagtccccaccttccccttattctgctgttaggctaaagttgtgttaca 621

                        
Query: 422 tttattaattttg 434
           |||||||||||||
Sbjct: 622 tttattaattttg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)