ATTTTATTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGG
ATCCGCGGAATTCCATGTTCCGCTCTGTGCCACCTCCTCCAAATCACTGC
ATGGTTAAGACGAGGACGAGACTTAGTCTTATGCTTGGTGACGACTTACC
CATCATATTAGCAAAGCGCTGAGTGGTCCAAAACTGCAGTAAGTGCTTAT
TAAGGGTGACTGTCAGTGACCACTTTTAGTCTTAATCCTGATGCTGACAA
TAATATACAGATATCTTGATCTTAAAAACCTCATACAGTTTCCCCTGCTG
GTTTTGTCCCATGTCCATATTTTTCTCCTGTGGCATGTAGAACGCAAATC
CAAGTTGCTGTTTGTCTCACCTGCTTAGCCCCTTTCATGCATTAATTATT
AAGTCATAAATTTAATTTCTGCTAGGGCTTGCCTTCCAGAGCATTTGCAA
TTGCATTTATTAAGATTGTACCTTTTCCACTCATTCACTTCAGCCCCCTT
CGTTTTGTAGATCAGTGAGAGAGGAAAGAATCCTATTTAGACTAGGAATC
TTTATATTGCTGTCTTTCCTCAGTGAATGGGTGTAAATTATGTGTAGGGG
AAATTAGAGTGGTTACTTCTGACATACACGCCTTTTTTTTTTCTTTTCTA
CTTTTCTCCAATGCCCACATCTTGTTTTCTCTCTCTTCACCTCGTCTAAC
ATTTCCTTGTTTCTTTTTTTTTCTTTTTTTTGC

CCAATTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAAC
TTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTA
ACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATT
ACATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAA
ACCTACTTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGC
TAGCGAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATT
GGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGGATCAG
AGTAATAGTGGCTTCATAAAATGACCTGGCTAGAGTACCTTCTACTTCTA
TCTTGTGAAATTATTTGTGTACAACTGTAATTATATCTTCTTTGAAGGTC
TGATAATACTCTGTCATAATCATATCTGGTTCCTGTCCTTCTTTTTGCTT
TGTCATATTCTTTATTACTTGCCTTCACTTTTTTTTATCTTTTATATTTT
TTACTTCCCTTTAACTTCTCCTTCTTCCCCTCTCTTCCCCCCACCTTTAC
ATTTTATTTTTTTCTCCTTCTCTTATTATTTTTTCCCTATACGTTTTCTC
CATTCTTCCTATCATAACGTTAAATTCCCTTTTATTTTCTCCTCCTCTAT
TTTTTTTCAATCTTCCA

Query= MSMg01no466_f19.b1 MSMg01no466_f19.b1 CHROMAT_FILE:
MSMg01no466_f19.b1 PHD_FILE: MSMg01no466_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:49 2005
         (484 letters)



>mm_chr1_128287161_128288044
          Length = 884

 Score =  847 bits (438), Expect = 0.0
 Identities = 473/486 (97%), Gaps = 4/486 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgccacctcctccaaatcactgcatggttaagacgaggacgagacttagtcttatgc 60
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtcacctcctccaaatcactgcgtggttaagacgaggacgagacttagtcttatgc 260

                                                                       
Query: 61  ttggt--gacgacttacccatcatattagcaaagcgctgagtggtccaaaactgcagtaa 118
           |||||  ||  || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtaaga--acctacccatcatagtagcaaagcgctgagtggtccaaaactgcagtaa 318

                                                                       
Query: 119 gtgcttattaagggtgactgtcagtgaccacttttagtcttaatcctgatgctgacaata 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 gtgcttattaagggtgactgtcagtgaccacttttagtcttaatcctgatgctaacaata 378

                                                                       
Query: 179 atatacagatatcttgatcttaaaaacctcatacagtttcccctgctggttttgtcccat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atatacagatatcttgatcttaaaaacctcatacagtttcccctgctggttttgtcccat 438

                                                                       
Query: 239 gtccatatttttctcctgtggcatgtagaacgcaaatccaagttgctgtttgtctcacct 298
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtccataactttctcctgtggcatgtagaacgcaaatccaagttgctgtttgtctcacct 498

                                                                       
Query: 299 gcttagcccctttcatgcattaattattaagtcataaatttaatttctgctagggcttgc 358
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctcagcccctttcatgcattaattattaagtcataaatttaatttctgctagggcttgc 558

                                                                       
Query: 359 cttccagagcatttgcaattgcatttattaagattgtaccttttccactcattcacttca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 559 cttccagagcatttgcaattgcatttattaagattgtaccttttccactcattcagttca 618

                                                                       
Query: 419 gcccccttcgttttgtagatcagtgagagaggaaagaatcctatttagactaggaatctt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcccccttcgttttgtagatcagtgagagaggaaagaatcctatttagactaggaatctt 678

                 
Query: 479 tatatt 484
           ||||||
Sbjct: 679 tatatt 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)