BAC Information

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BAC

Clone NameMSMg01-466J15
Chromosome1 (Build37)
Map Location 134,335,222 - 134,490,599
singlet/doubletdoublet
Overlap geneRipk5, Rbbp5, Tmem81, Cntn2, Nfasc
Upstream geneSrgap2, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J15.T7 (MSMg01no466_j15.b1)MSMg01-466J15.TJ (MSMg01no466_j15.g1)
ACCAG550510AG550511
length732771
length of high quality
(start - end)
239 (71 - 309)416 (78 - 493)
definitionCHROMAT_FILE: MSMg01no466_j15.b1 PHD_FILE: MSMg01no466_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:09 2005CHROMAT_FILE: MSMg01no466_j15.g1 PHD_FILE: MSMg01no466_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,490,361 - 134,490,599)(134,335,222 - 134,335,637)
sequence
NAAATTATAATTGCGGCGCTAATACGATCCTAATGCGACAGAACCGCGGA
ATTCCTGCTTTTCAGAGAAAGAGATGGTTTTGGATTTGTGGAAATTGCTC
AGAGATTTATTCTAGAGCTCTCAATCATATTTGTGTTCCTAATCTTATGA
ACTACAACTAATGGGGAAAACTGAGGCAGCAGAAAACCAGATCACGTGCT
TTCAGAGCCCCAGGGCCTTCAGCGCCATCATACTTTGAACATATGAGCCT
GGGACGGTCCCTTGCCCTACTATCAAGCATCTTGCAGGGGCTCTTGTTGC
CTAGAATTGTTTTCTCCTGCACCACCTACATCTTTATCCTCAATTCCTGG
CATCGTAGAGGGTCACTTAGCCCAGCCAGGGTAGGACAAATCCTGGGGGG
GAAAGCTGGAATATAACACTCTGCCTGAATTGTGCCTTGCAGACACCTCT
TATATGGCAAGCCCTTGATTATGGATAGAAATGTGTTAGGTCTCTAAGCC
CCAGGTGGAATAACGGCAACCTGCCTAGCTCCGGTGGGGTAGAGCATGAC
GCCCTGAACACCACTTAGCATCCTCAGGGTTGCATCTAGCACCTGGCCAT
ACCCCTGGAGTCAGGCTGGATTCAGAACCTTTCTGTTTTCTTCTGCGGGC
CCCCCTATGGGGGTTTCTCTTCCCTTTGTCATACCTCCTTCCTCTTTTTC
TGGACACCTTGGGGCTGTGCCTGGAACTTATN
NCCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGTCCAGATGGCTATTCTAAGAGG
AAGGAAATGAGGGTAGTTAGACTATTCAAAGTAGAGAAGTAAAGAGAGAT
ATTTTAGATAATTGAAGAAAAAATATTTTATGGGTCAGTAAAGGAGAAAC
TGAAATGATGTGTCAGGTAGGATATAGGATGTTCAGACCAACATTAAATC
ATAAATACCTTGGAGACAGTAAGCTTGTGCTCTTTGCTGAACATTCTTAG
CTCCCCCCAGTACATATCTTGTATATAGTGAAATGCAGCCATTCTGCTTA
CACTGTGTGCCAAGAAAACCAGGAACACCTATTATAGGCTGATGCACATA
GTAAGAAGATGAGTAGCAGCTGGGCATGGTGGTGCACGCCTTTAATCCCA
GCACTTGGGAGGCAGAGGCAAGCAGATTTCTGAGTTGGAGGCCAGCCTGG
TCTATAAAGTGAGTTCCAGGACAGCCAGGGCTATACTGAGAAACCCTGTC
TCAAATAATCCTTAAAATATGGTCTTTTCCCACATTTTTGATGATTTACT
TTGGAGGATACTTTGTGTTGTTTCTTTCTTCTCTTTTATTTCTCTTCTTT
TTATTTATTTCTCTCTCCTGTCCTCTTCCTATGTTTATCGTTTCTCATAT
CTCGTTATTTCCATTTTTATTCTTGTGCTTTTCCTTTTTGATTCCCTCAG
TTTCTATTTTCCTTCATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j15.b1 MSMg01no466_j15.b1 CHROMAT_FILE:
MSMg01no466_j15.b1 PHD_FILE: MSMg01no466_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:09 2005
         (239 letters)



>mm_chr1_134490161_134490799
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatggttttggatttgtggaaattgctcagagatttattctagagctctcaatcatat 60
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 439 gagatggttttggatttgtggaaattgttcagagatctattctagagctctcaatcatat 380

                                                                       
Query: 61  ttgtgttcctaatcttatgaactacaactaatggggaaaactgaggcagcagaaaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgtgttcctaatcttatgaactacaactaatggggaaaactgaggcagcagaaaaccag 320

                                                                       
Query: 121 atcacgtgctttcagagccccagggccttcagcgccatcatactttgaacatatgagcct 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcacatgctttcagagccccagggccttcagcgccatcatactttgaacatatgagcct 260

                                                                      
Query: 181 gggacggtcccttgccctactatcaagcatcttgcaggggctcttgttgcctagaattg 239
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 gggacggtcccttgccctactatcaagcatcttgcaggggatcttgttgcctagaattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no466_j15.g1 MSMg01no466_j15.g1 CHROMAT_FILE:
MSMg01no466_j15.g1 PHD_FILE: MSMg01no466_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:09 2005
         (416 letters)



>mm_chr1_134335022_134335837
          Length = 816

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccagatggctattctaagaggaaggaaatgagggtagttagactattcaaagtagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtccagatggctattctaagaggaaggaaatgagggtagttagactattcaaagtagaga 260

                                                                       
Query: 61  agtaaagagagatattttagataattgaagaaaaaatattttatgggtcagtaaaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaagagagatattttagataattgaagaaaaaatattttatgggtcagtaaaggaga 320

                                                                       
Query: 121 aactgaaatgatgtgtcaggtaggatataggatgttcagaccaacattaaatcataaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgaaatgatgtgtcaggtaggatataggatgttcagaccaacattaaatcataaata 380

                                                                       
Query: 181 ccttggagacagtaagcttgtgctctttgctgaacattcttagctccccccagtacatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ccttggagacagtaagcttgtgctctttgctgaacattcttagctccccccagtacatac 440

                                                                       
Query: 241 cttgtatatagtgaaatgcagccattctgcttacactgtgtgccaagaaaaccaggaaca 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgtatatagtgaaatgcagccattctgcttacactgtgtgccaagaaaaccaggaaca 500

                                                                       
Query: 301 cctattataggctgatgcacatagtaagaagatgagtagcagctgggcatggtggtgcac 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctactataggctgatgcacatagtaagaagatgagtagcagctgggcatggtggtgcac 560

                                                                   
Query: 361 gcctttaatcccagcacttgggaggcagaggcaagcagatttctgagttggaggcc 416
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 gcctttaatcccagcacttgggaggcagaggcaagcggatttctgagttggaggcc 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)