BAC Information

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BAC

Clone NameMSMg01-466N07
Chromosome1 (Build37)
Map Location 12,338,348 - 12,338,582
singlet/doubletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466N07.T7 (MSMg01no466_n07.b1)MSMg01-466N07.TJ (MSMg01no466_n07.g1)
ACCAG550685AG550686
length8111,276
length of high quality
(start - end)
235 (77 - 311)---
definitionCHROMAT_FILE: MSMg01no466_n07.b1 PHD_FILE: MSMg01no466_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:28 2005CHROMAT_FILE: MSMg01no466_n07.g1 PHD_FILE: MSMg01no466_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCTATACCAAGAAATTTTATATCATTTGATTTTCAGT
GAGTGGAACAATGAGCCAGAAGAGAGCAACAGCTGAATGTTAGTGGCTAG
ACCACCAGGGAGCATGGGGTGGCTACTTTAGGCTGTGCAACTGGGTGGCA
ATTGGAGGACATTACTCAGATGAAAGAACTCTTTCAGGAAATGGTCAATG
CAGGAGCCTAAGTACCTTTCATTTGGGAGCTAAGGGAAGAAGGTTGGATT
GGGTGGTGTAGACAGGCTTTTTTTTTATAGCTAACTAGGAGATGCCAGAC
GTAAACACTGGGGCCAGACTCATCAGTCTTGCAGGCCACAACAAAGAAGG
TAGAATACTTTAAAGAACGTGTTGCCACACCCTTGTAGGGGTTCTCACCG
GAAATAGTCTTAAGAGCTGTCGTCCCAGGCATAGGATTATTATTTCCTTG
TGCCTCTTGAACCTGCCCAGTTCTTGAAAGGTACCTTTATGTTTCTCGTC
CCTCATCTCCTTTCCTTCTCCCGCCCTATATTTTTTATTCTGTCTTTCTC
CGTTGTGTTCTTTTCCTCCCTCTTCATACCTTCGCCCTCTCTCGTACCCC
TCCATATTCTCCATGTTTCTCCTTCATATATACTAACTCACTCTCTTTTT
CTCTCTACCCTATTTCACCACCCACGCCCCCTTTTTATTTCATCCCCCCC
ACCTTCTTTAACTTCTCCTCTACATCCTTTCTAATTTCCCCTTCTTCTTC
TCTTTCTTTCT
GCCCGGTGCGGTGGTGTGAGTGCTGTGTGCTCGCGCAAGGCGGGGNACTT
ATCCTCCCACATACAACACCGCAGCCNCACAAANNAATTTTCCACTCCTA
CGATCACCACACATAAGACTATCGAAGCAAACAGAACGACCGCACACATA
CATGTTTCTAGCGCAGTGGTAATGGCTCTGCGTTACTAGCTGTTATCGGG
GCGCGGTGCGGCCGCACGCAGTGTGGCTGGGGTGGTCTGGGTGTGCGCAC
AGGATTAAGATCGATCGTAGGACCGGAGTGATGAGCAGAGTGAGACAGGA
ATAGATTTAATGTGAGAGGACCCCGCGCGCACGCGACCGCCGCGAGGGTT
GTTGCGCGCGGTCGGCGCTCGCGGCTGCTTGTGTGACTGGCTTTGACGCT
GCTTGCGCGCGCGCTTATGCGGGGTGGNGTGTGGGTGTGTAGAGGGACGT
TGCTATCGGGAGAGACGGGCCGGCGCCGGCTGGTATATAGTTATATTATT
TATTCCTCTTGTCCGCGCCGTTCTGTGCTCGAGATCTAGTGTGTGGTCCA
CGCGCTGGATGTGCCGACGCCTCCACGCGCGCTGATAGAGAGCCACACGA
GCCGACTCCGCGAGAACTGTAGCGTGTGCTCGGTCTGTTGCGTATCCATG
CCGATGACGCGAGAGAGCGGTGCTCGTTGCGACGGATGTGGCGTCGTCGG
ATCGGATTCCGCGTTCAGCTTGTATGCGCTTGTGTGCATACGANCTCCTA
TCTCTCTGATATGACGGAGCGCAATGTATACAACGAATGACGTGGCGCGC
CGCTCCTACCACTCCCGATGATGAGCTCTTCTATCACAATATGATTCTGT
ATCTCTAGTCGGCTTATGTATTGTAGTGCTGTGCCTGGTATTGAGCTGTA
TGACGTGGGTCACGGCGCGTGAGATGTGGCACGTAAGTATGGCTCGTGAC
GCTCATTAGCCCTCTCACCGAGAGGAACAGACGAACTAGATACACACTCC
TGATTGGCGAGACTATCCCTCATCATGGATTGGCTCCACGATGACCGATA
CGCGATTCTATGGAGATCCACTACATCCGCAAGTAGAACAGATATAAGTT
ATGNTAAGCGCACATATATCTTNCTTCACTCCATAAATGTAGGAGACTCG
ATATATGCGCATGATGCCGAGCTCGTAGTGCGGACAGATCCTGAGATGAT
ATTCGTGTTCTATAGCGCTCGACATGTGGAATCAACANCGCGCGCACAGC
CTAGATTAAATGCAAGCTATACCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_n07.b1 MSMg01no466_n07.b1 CHROMAT_FILE:
MSMg01no466_n07.b1 PHD_FILE: MSMg01no466_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:28 2005
         (235 letters)



>mm_chr1_12338148_12338782
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttatatcatttgattttcagtgagtggaacaatgagccagaagagagcaacagctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attttatatcatttgattttcagtgagtggaacaatgagccagaagagagcaacagctga 376

                                                                       
Query: 61  atgttagtggctagaccaccagggagcatggggtggctactttaggctgtgcaactgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgttagtggctagaccaccagggagcatggggtggctactttaggctgtgcaactgggt 316

                                                                       
Query: 121 ggcaattggaggacattactcagatgaaagaactctttcaggaaatggtcaatgcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggcaattggaggacattactcagatgaaagaactctttcaggaaatggtcaatgcaggag 256

                                                                  
Query: 181 cctaagtacctttcatttgggagctaagggaagaaggttggattgggtggtgtag 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctaagtacctttcatttgggagctaagggaagaaggttggattgggtggtgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)