BAC Information

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BAC

Clone NameMSMg01-466N22
Chromosome1 (Build37)
Map Location 15,417,946 - 15,418,169
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466N22.T7 (MSMg01no466_n22.b1)MSMg01-466N22.TJ (MSMg01no466_n22.g1)
ACCAG550715AG550716
length899876
length of high quality
(start - end)
228 (58 - 285)158 (83 - 240)
definitionCHROMAT_FILE: MSMg01no466_n22.b1 PHD_FILE: MSMg01no466_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:32 2005CHROMAT_FILE: MSMg01no466_n22.g1 PHD_FILE: MSMg01no466_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTCTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGA
GGATCCGCGGAATTCACTTACTCCCCAGGCTGTTTCTGTAGATGTAAATG
CACCTATATTTATTTCACTTAGGGTATAAGCCTGGGGACTATAAGTCTTT
GGGTGGTCACCTAACAACGACTTTTGTCAATGATGCTACACTTTACACGA
AACAGTAAAATATCACCAGAGGGCTGTGTTTCTGTCTTGCAAATTGTCAA
CTATTGTTTTGTGGTATGTGTGTGTGTGTGTGTATCCCGCCTTCCTTGCT
TTGGCCCCTTAGTGTGGTTTTTTTTTTTTTTATTACCTACATATTGTTGC
CTTGCCTTTGTTTTTTGTTTTTTCCTTTCCTTCCTTTTTTCTCTCTTTCT
TTCCTCTTCCATCTAGACGTACATTTTCCTATTTTTCCTCCCACTACACT
TTTTGTTTACCTTTACTCCCTTTTCTTCTTATTATTTCTTCCTCCTTTTT
TTTTTTACCTCTCCCTTCTCCTTTTTTTCTCTACACATTCCTTTGTATTT
CCTTCCTTATTATTTCCCTTCTTTGCTCTATTCTATTTTTATATCCTACC
ACTTTTTATGTGTACCTCTTTTTCTCCCCCTTATTTCCTCTTTTTGTTAT
CCCCTCTTAACCTATACTAATCACTTTTTTATGTTCCTCCCCCTCACCAC
TAAAATATAACATATTACCCTCTTCTTTACCCCTTCCGCGTTTTCGTGTT
TACCCCTTATTTTTTCATCTTTTATATCTCACACCACTAAGTCTCATATA
TACCCCACCCTATACTTACGAAGTATATCCCCTTATATCTTGCCCCCTAT
TCTCCCTTCCCCCCTTTTTGTGTCCTCTACTTTATTTTTTACTCCCTTC
GTTTGCTCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGTACC
CCATTTTTAAATAGGGTTATTTGGTTCTCTGGAGTTTAACTTCTTGAGTT
CTTTGTATATACAGAATATTAGCCCTCTCAGATGTAGGATTTGTAAAGAT
GTTTATAGTAGGATGTTGAAGTCTCCCACTATTATTGTGTGCTGTGTGTT
TTTTTTTTTTTTGTATCTTTTTTTGTGTGACTATCTTTTTTTTTTTGCTT
CTCTTTCTTTCTCTGTTTTTTTTTTTTTTTTTCGTGCGTTGGCAGTCACC
TACATATTTATTACGTTTTTTTTTTTCTTCTTTCTTTTCTTTTTTTCTAT
ATCTTTTTTCTTTATGCTTATTCCTCCTCCCCCCTCCCAATTTATAATGC
CCCATCTCCTCTTCCCCTTTTATTCTTTCCCTCCGCCCTTTGTTCTCTCC
TTCTTTATCTTTTCCCCTCTCTTCTCTTCTATTTTTTCTTTTTTTCTATT
TTTCTTTGTTTTTTCTTTTTTATTCCTTTATTTTCTTTCTTAATTTTCTT
ATGTTCCCCTATACTCTCTATCCCTCCCATGTTCCTCTTATCGCTTTCTT
TTTTATCACTTTAATTAACTCTCTTATTCCTTTCTTATGTGTTGCGTCTT
TTCTTGCTCATTTTCTAATGTCTCAACTTTGCGCCTTTCCTATTTTTTCT
TTTTCTTTATTTCCATCCTTTTCTTTTTTTATTTTCTTTCGGCCCTTCCG
CTTTCTCTTTTATCTCCTTCTTCTCCTCTAGTGTTTCTTGAGTCTAACCC
CTCTTCCATCCTTATCCTTCACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_n22.b1 MSMg01no466_n22.b1 CHROMAT_FILE:
MSMg01no466_n22.b1 PHD_FILE: MSMg01no466_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:32 2005
         (228 letters)



>mm_chr1_15417744_15418371
          Length = 628

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%), Gaps = 2/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcacttactcc-ccaggctgtttctgtagatgtaaatgcacctatatttatttcac 61
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaattcacttac-cctccaggctgtttctgtagatgtaaatgcacctatatttatttcac 368

                                                                       
Query: 62  ttagggtataagcctggggactataagtctttgggtggtcacctaacaacgacttttgtc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttagggtataagcctggggactataagtctttgggtggtcacctaacaacgacttttgtc 308

                                                                       
Query: 122 aatgatgctacactttacacgaaacagtaaaatatcaccagagggctgtgtttctgtctt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatgatgctacactttacacgaaacagtaaaatatcaccagagggctgtgtttctgtctt 248

                                                        
Query: 182 gcaaattgtcaactattgttttgtggtatgtgtgtgtgtgtgtgt 226
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcaaattgtcaactattgttttgtggtatgtgtgtgtgtgtgtgt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)