Query= MSMg01no467_d16.b1 MSMg01no467_d16.b1 CHROMAT_FILE:
MSMg01no467_d16.b1 PHD_FILE: MSMg01no467_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:02 2005
(575 letters)
>mm_chr1_15932762_15933735
Length = 974
Score = 1035 bits (535), Expect = 0.0
Identities = 565/577 (97%), Gaps = 5/577 (0%)
Strand = Plus / Plus
Query: 1 gtttaaatctttgagacagagtcttatcactgatgaagacatgtaaccagagaggaagaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttaaatctttgaaacagagtcttatcactgatgaagacatgtaaccagagaggaagaa 260
Query: 61 ttggaattggtaagctcctgtctctcccaggaagtgaaagaagggaacatttagtgacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaattggtaagctcctgtctctcccaggaagtgaaagaagggaacatttagtgacat 320
Query: 121 aaagtaagatcttgaaaatcagatcatatacttggtaattttagaagatacctctgaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaagtaagatcttgaaaatcagatcatatacttggtaattttagaagatacctctgaggg 380
Query: 181 atgctctctgggaaaataaacaggacaaatagggttacaagttttaaggtctcaaatatc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctctctgagaaaataaacaggacaaatagggttacaagttttaaggtctcaaatatc 440
Query: 241 acttgcct--atttggaataatcctcgaactcctgaatctaaggtataatttactctgag 298
|||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 441 acttgcctaaa---ggaataatcctcaaactcctgcatctaaggtataatttactctgag 497
Query: 299 tttggaatagctacaaggttttaaaccagtgttacagagtagagtgggtgggaagcagga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttggaatagctacaaggttttaaaccagtgttacagagtagagtgggtgggaagcagga 557
Query: 359 ttctcataaagttagaggcacagccaggaagcacatgaacaagggaaccagctctacttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttctcataaagttagaggcacagccaggaagcacatgaacaagggaaccagctctacttt 617
Query: 419 ggagaacatgtattgttgcttctacaaagaaaggaataaagcttttccacaagcaattgt 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 618 ggagaacatgtattgttgcttctacaaagaaaggaacaaagcttttccacaagcaattgt 677
Query: 479 aagatgtttagtacaaaaggttatgaaccgtgaccctgacccccacccagagaacactgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aagatgtttagtacaaaaggttatgaaccgtgaccctgacccccacccagagaacactgt 737
Query: 539 agctgatacagaagatttagcagtttcccaatctaaa 575
||||||| |||||||||||||||||||||||||||||
Sbjct: 738 agctgatgcagaagatttagcagtttcccaatctaaa 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space: 544660
Effective search space used: 544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_d16.g1 MSMg01no467_d16.g1 CHROMAT_FILE:
MSMg01no467_d16.g1 PHD_FILE: MSMg01no467_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:02 2005
(243 letters)
>mm_chr1_16099078_16099720
Length = 643
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Minus
Query: 1 actgtgttagcagactaaccttgactcatagattcagctgcctctgtctcctgagtgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 actgtgttagcagactaaccttgactcatagattcagctgcctctgtctcctgagtgctg 475
Query: 61 aggttaagggtgtgtgtggccaccactggcccaagcaagggccaggcctattattcagaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 474 aggttaagggtgtgtgtggccaccactggcccaagcaagggccagacctattattcagaa 415
Query: 121 ttataaacatatagtattgttgacaagttgtcctgtcaggtccattcagttggctgtgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttataaacatatagtattgttgacaagttgtcctgtcaggtccattcagttggctgtgac 355
Query: 181 acataatgactgttcttgcagcagcaaaaagcttgtctgttgctcaattcatctaccgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acataatgactgttcttgcagcagcaaaaagcttgtctgttgctcaattcatctaccgca 295
Query: 241 cac 243
|||
Sbjct: 294 cac 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
